Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a09
         (571 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000156164F Cluster: PREDICTED: similar to mast cell ...    38   0.17 
UniRef50_A1WUQ2 Cluster: CRISPR-associated RAMP protein, Cmr4 fa...    36   0.88 
UniRef50_A6G6B7 Cluster: Sensor protein; n=1; Plesiocystis pacif...    33   4.7  
UniRef50_Q46H97 Cluster: DNA repair enzyme, contains HhH domain ...    32   8.2  
UniRef50_A1JJL5 Cluster: Putative adhesin; n=1; Yersinia enteroc...    32   8.2  

>UniRef50_UPI000156164F Cluster: PREDICTED: similar to mast cell
           proteinase-3, partial; n=1; Equus caballus|Rep:
           PREDICTED: similar to mast cell proteinase-3, partial -
           Equus caballus
          Length = 265

 Score = 37.9 bits (84), Expect = 0.17
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
 Frame = -1

Query: 211 RLGGKTPASMKHIRETLIFQRRTGERVSPTTHHCMTVTQM-----ERRRSQFRERSLVCT 47
           RLGGKTP+++K +RE  +  +R  +R+S    H  T+TQ+      +R++ F+ RS V +
Sbjct: 146 RLGGKTPSAIK-LREVELDIQRDEQRISHYNDHYNTITQICVGDPTKRKTLFKMRSPVVS 204

Query: 46  T 44
           T
Sbjct: 205 T 205


>UniRef50_A1WUQ2 Cluster: CRISPR-associated RAMP protein, Cmr4
           family; n=2; Ectothiorhodospiraceae|Rep:
           CRISPR-associated RAMP protein, Cmr4 family -
           Halorhodospira halophila (strain DSM 244 / SL1)
           (Ectothiorhodospirahalophila (strain DSM 244 / SL1))
          Length = 304

 Score = 35.5 bits (78), Expect = 0.88
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +2

Query: 128 GHAFASSPLKN*RLANMLHRRGRFPSKTCTNGPRSRHCRSLAALTVFGV 274
           G+A+A+SPL   RL  +LH+ G  P  T    P+    R+ AA+T  G+
Sbjct: 99  GYAYATSPLALARLQRLLHQAGLQPEWTVPTLPQGEAARAPAAVTPEGL 147


>UniRef50_A6G6B7 Cluster: Sensor protein; n=1; Plesiocystis pacifica
            SIR-1|Rep: Sensor protein - Plesiocystis pacifica SIR-1
          Length = 1873

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 27/77 (35%), Positives = 39/77 (50%)
 Frame = -3

Query: 341  YKH*KIIGSKLLIAQQNNESDDEHRKLSAQQVNGSGANAAHWCTSWRENARVDEAYSRDA 162
            ++H  I G  ++ A++ +ES DE      +   G  A+AA       +NAR+ EA  R  
Sbjct: 1457 FQHSDIHGVLMVEARERDESFDESGLDILRVFAGQAASAA-------DNARLYEALQR-- 1507

Query: 161  NFSEANWRTRVPHYPPL 111
              SEANWRT V   P +
Sbjct: 1508 --SEANWRTLVDGVPDM 1522


>UniRef50_Q46H97 Cluster: DNA repair enzyme, contains HhH domain and
           nuclease of RecB family; n=2; Prochlorococcus
           marinus|Rep: DNA repair enzyme, contains HhH domain and
           nuclease of RecB family - Prochlorococcus marinus
           (strain NATL2A)
          Length = 483

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 254 QQVNGSGANAAHWCTSWRENARVDEAYSRDAN 159
           +Q N  GA A  W   W+++ ++++ YSR+ N
Sbjct: 429 KQSNADGARALLWWRQWKKSRKINKMYSRNLN 460


>UniRef50_A1JJL5 Cluster: Putative adhesin; n=1; Yersinia
           enterocolitica subsp. enterocolitica 8081|Rep: Putative
           adhesin - Yersinia enterocolitica serotype O:8 / biotype
           1B (strain 8081)
          Length = 2484

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
 Frame = -3

Query: 344 HYKH*KIIGSKLLIAQQNNESDDEHRKLS-----AQQVNGSGANAAHWCTSWRENARVDE 180
           HY    + G  +   QQ   S + HR++      A+      AN+ H    W+ + R+++
Sbjct: 224 HYVSDWMFGYNIFFDQQ--VSGNAHRRVGFGGELARDYIKLSANSYHRLGGWKNSTRLED 281

Query: 179 AYSRDANFSEANWRTRVPHYPPL 111
              R AN  +      +PHYP L
Sbjct: 282 YDERAANGYDIRTEAYLPHYPQL 304


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,227,589
Number of Sequences: 1657284
Number of extensions: 9726778
Number of successful extensions: 25866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25856
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)