Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a09
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.6  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   2.6  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   2.6  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   7.8  

>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 209 SWRENARVDEAYSRDANFSEANWRTRVPH 123
           SWRE  +    Y        A+WRT + H
Sbjct: 314 SWREITKTKANYDNGIRLENASWRTWMKH 342


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -3

Query: 197 NARVDEAYSRDANFSEANWRTRV-PHYPPLYDSDPNGTPTQSVP*ALAGLHDVYACVQCN 21
           N R+    +R + FSE    + V   Y P+ D D   TP      A+  LHDV    Q  
Sbjct: 622 NRRLSIFDTRSSEFSEKEEFSSVFDDYGPINDLDWTSTPNSHSILAVGFLHDVILLCQNR 681

Query: 20  R 18
           R
Sbjct: 682 R 682


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = -3

Query: 296 QNNESDDEHRKLSAQQVNGSGANAAHWCTSWRENARVDEAYSRDANFSEANWRTRVPHYP 117
           Q  ++D+E  +    + N S  ++A   +S +    +DE ++R    S+++      +  
Sbjct: 14  QQLQNDEELARRLQDEWNSSSPSSAPSSSSSQNQVELDEQFARSLQNSQSS-----SYSL 68

Query: 116 PLYDSDPNGTPTQS 75
           P +D  P+  PT S
Sbjct: 69  PPFDHPPSKNPTSS 82


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 314 KLLIAQQNNESDDEHRKLSAQQVNGSGANAAHWCTSWRENARVDEAYSRDAN--FSEANW 141
           + LI Q+NN+S +E +K   ++V G+   +    T +  +A     ++R+    F+   W
Sbjct: 286 QFLIQQRNNQSSNEEQK-QEKRVPGTCGLSNLGNTCYMNSALQCLTHTRELRDFFTSDEW 344

Query: 140 RTRVPHYPPL 111
           + +V    PL
Sbjct: 345 KNQVNESNPL 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,529
Number of Sequences: 5004
Number of extensions: 40114
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)