Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a09
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0101 - 14431327-14432390,14432599-14432731                       29   3.4  
08_01_0827 + 8016704-8017150                                           28   6.0  
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379...    28   6.0  
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852...    28   6.0  
08_02_1496 - 27541081-27541549,27541626-27541888                       27   8.0  

>03_03_0101 - 14431327-14432390,14432599-14432731
          Length = 398

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 244 TAVARTRPIGARLGGKTPASMKHIRETLIFQRRTGERVSPTTH 116
           TA+AR   I A+L G+T   +K+   + I ++     + P TH
Sbjct: 117 TALARWSQIAAQLPGRTDNEVKNFWNSYIKKKLRDRGIDPATH 159


>08_01_0827 + 8016704-8017150
          Length = 148

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -3

Query: 269 RKLSAQQVNGSGANAA---HWCTSWRENARVDEAYSRDANFSEANWRTRVPH 123
           RK+    V   GA+     H    W    R  +  + +A+ +EA+WR   PH
Sbjct: 89  RKMETANVGVGGADGVERNHGVIGWGRGGRGAQVEADEASTAEASWRGIRPH 140


>05_04_0206 +
           19034259-19035462,19036870-19037045,19037752-19037975,
           19038133-19038914,19039337-19039494
          Length = 847

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query: 200 ENARVDEAYSRDANFSEANWRTRV-PHYPPLYDSDPNGTPTQSVP 69
           E A ++E    D +  +   R R  P  PPL  S   GTP    P
Sbjct: 174 EEAEIEEEEDEDEHLDDRRRRLRHRPQVPPLVSSPAPGTPVTPQP 218


>03_02_0651 +
           10183050-10184167,10184350-10184974,10185023-10185208,
           10185325-10185660
          Length = 754

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 546 LIKSFRESHLHIISYTFDLVS--EKKH 472
           L+ S R+ HLHIIS  F+  S   KKH
Sbjct: 643 LVPSMRQLHLHIISQDFNSASLKNKKH 669


>08_02_1496 - 27541081-27541549,27541626-27541888
          Length = 243

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 220 IGARLGGKTPASMKHIRETLIFQRRTGERVSPTTH 116
           I ARL G+T   +K+   T I ++  G  + P TH
Sbjct: 92  IAARLPGRTDNEIKNYWNTHIRRKLLGRGIDPVTH 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,699,821
Number of Sequences: 37544
Number of extensions: 273370
Number of successful extensions: 765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)