Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a09
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46460| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27)                   28   6.2  
SB_41935| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_19681| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_46460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 127 PTTHHCMTVTQMERRRSQFRERSLVCTTSM 38
           P+++HC     + RRRS  R RS+ C  S+
Sbjct: 37  PSSNHCRRCRSIARRRSVARRRSIACHRSV 66


>SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27)
          Length = 510

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 209 SWRENARVDEAYSRDANFSEANWRTRVPHYPPLYDSDPNGT 87
           +W+E  R D     D      NW  R+P Y  LY+  P+ +
Sbjct: 302 TWKEKIRFDMLECEDG----LNWVERLPVYQQLYNESPHSS 338


>SB_41935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
 Frame = -1

Query: 355 YKLNIINIRKSSDPSC*SRSKIMKATMNTENCQRSK*TAVARTRPIGARLGGK-TPAS-- 185
           YKL+ +      D  C  ++K+++A +     +  +     R  P+  + G + TP+   
Sbjct: 165 YKLDRLAEVIIIDECCKVQTKVLRAILGYLATRPCRYRKQGRPVPVPGKRGLQDTPSEEL 224

Query: 184 -MKHIRETLIFQRRTGERVSPTTHHCMTVTQMERRRSQFRERSLVCTTSMRAYSAT-GHP 11
            +  I+   +  R+ G      +HH +TV  +    ++  ++ +VC T +     T  HP
Sbjct: 225 IIARIKRYALDDRKKGRTKYTGSHHVLTVDHVLGMIAEAEKKCMVCGTQLLLQRYTKSHP 284


>SB_19681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 98  GHCHTVVGSGGHAFASSPLKN*RLANMLHRRGRFPSKTCTNGPRSRHCRSLAAL 259
           G    +   GG  F S+  ++  L N ++     P+    NG   RH R+L+ +
Sbjct: 706 GKVKNISSDGGGEFISNEFESPLLRNGINHSKSCPNSPYQNGTAERHWRTLSEM 759


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,368
Number of Sequences: 59808
Number of extensions: 316781
Number of successful extensions: 1095
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)