Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a09
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   2.4  
Z83221-6|CAB05703.3|  210|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39997-8|AAA81100.1|  718|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical...    27   9.5  
AF125956-3|AAD14726.3|  264|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC084159-3|AAK39367.3|   72|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -3

Query: 203 RENARVDEAYSRDANFSEANWRTRVPHYPPLYDSDPNGTPTQSVP*ALAGLHDVYACVQC 24
           +E  RVD   +R+ +   +    +V H P L  S P   P   +P   +G   VY C  C
Sbjct: 266 QEQQRVDFEVARNVSQIMSKNGLKVMHEPLLTGSLPQLAPLAPLPPPKSG---VYQCPNC 322

Query: 23  NR 18
           NR
Sbjct: 323 NR 324


>Z83221-6|CAB05703.3|  210|Caenorhabditis elegans Hypothetical
           protein C49A1.10 protein.
          Length = 210

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 248 LAALTVFGVHRRFHYFAARLTTW 316
           L AL V+G+ R FH F +    W
Sbjct: 25  LCALAVYGLFRNFHLFGSNYFIW 47


>U39997-8|AAA81100.1|  718|Caenorhabditis elegans Hypothetical
          protein F56D1.2 protein.
          Length = 718

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 55 VCTTSMRAYSATGHPLTL 2
          +CTT+  AY ATG PL L
Sbjct: 4  LCTTNFLAYRATGSPLLL 21


>AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical
           protein Y51A2D.18 protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 432 YSYFCKIVKITKNSFSV 382
           Y+YFC   K+ KNS SV
Sbjct: 118 YNYFCNTSKLVKNSISV 134


>AF125956-3|AAD14726.3|  264|Caenorhabditis elegans Hypothetical
           protein DC2.5 protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 221 HWCTSWRENARVDEAYSRDANFSEANW 141
           +W + W +   +DE  +RD    EA W
Sbjct: 224 YWESCWDDELNLDEKVARDEELQEALW 250


>AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical
           protein T05E7.1 protein.
          Length = 474

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 119 PPLYDSDPNGTPTQSVP*ALAGLHDVYACVQC 24
           P   D   N TPT S+P A A  +  Y  VQC
Sbjct: 327 PAFRDLYSNLTPTTSIPWARAPKNTAYRIVQC 358


>AC084159-3|AAK39367.3|   72|Caenorhabditis elegans Hypothetical
           protein Y73B3A.20 protein.
          Length = 72

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 323 IGSKLLIAQQNNESDDE-HRKLSAQQVNGSGANAAHWCTSWRENA 192
           +G K+       + DD  H   S +++     +  H+C  WRE A
Sbjct: 28  LGGKIPNFHGEKKPDDRFHHNFSLEEIELQCRSTTHFCEIWRETA 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,856,766
Number of Sequences: 27780
Number of extensions: 229135
Number of successful extensions: 588
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)