Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6a04
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 30 0.16
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 28 0.64
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 2.0
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 2.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 2.0
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2... 26 2.6
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 3.4
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 24 7.9
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 24 7.9
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 24 7.9
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 24 7.9
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 29.9 bits (64), Expect = 0.16
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 152 FYSWYARVLKQNRTLPDCLS*NRYSTHILNVHNLNRF 42
FY + + L N++ P CLS ++ + ++ +N +RF
Sbjct: 577 FYQSFQKALSMNKSQPSCLSFSKLNDFVVFFNNYSRF 613
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 27.9 bits (59), Expect = 0.64
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +2
Query: 206 KRLQSLLKSHHFRNDAKTLAYFGYYLTHTG----TLKTFCCGVQNSSPTKHDHLNNCVYY 373
+RLQS + R + L + GY +++ G T+ T G+ + P +D ++Y
Sbjct: 836 RRLQSTELARIMRESPRPLVFLGYVVSNVGQEPQTILTRDTGMLDIEPADYDRWCQYIFY 895
Query: 374 LEIK 385
+K
Sbjct: 896 RGVK 899
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 245 NDAKTLAYFGYYLTHTGTLKTF 310
ND T+ + Y LTH+GTL+TF
Sbjct: 314 NDIDTI--YVYILTHSGTLETF 333
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 2.0
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3
Query: 237 WWLFSKLCNLL 205
W LFSKLCNLL
Sbjct: 1107 WGLFSKLCNLL 1117
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 2.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 191 YFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFCC 316
Y + + QSL+ ++F ND L+ +G+ L L+ FCC
Sbjct: 522 YNEQMSSAQSLV-DNYFNND-HDLSRYGFLLVSLLRLRQFCC 561
>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 2.6
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 158 NLKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTG 295
NL KN N Y+D + H+ R+ A LAY TH G
Sbjct: 116 NLLKKN--NRIYYDERNETFTFKPLHNIRSGAGLLAYLDSQKTHVG 159
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 3.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 98 NSREACDSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLK 229
N+RE S+ + + T+C SF L+H F+ T+ Y + + L K
Sbjct: 565 NTREVNSSIEELKITDCLSFLLEHNIFN--TFLVYNEGIVKLNK 606
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 41 GIYLDYGHLKCAYCNDFSSNSREAC 115
GIYL +G L CA+ + S C
Sbjct: 947 GIYLFFGFLSCAFISSSSLTMTVLC 971
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 24.2 bits (50), Expect = 7.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 152 SFNLKHKNFDNPTYFDYVKRLQSLLKS 232
SF L +FD +Y Y+K +K+
Sbjct: 71 SFRLSPTSFDKKSYMSYIKGYMKAIKA 97
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 24.2 bits (50), Expect = 7.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 53 DYGHLKCAYCNDFSSNSREACDSVLKREH 139
+Y H++CA C D+ S S++ E+
Sbjct: 271 NYKHMRCAACMDYVGISALIAASIISVEY 299
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 367 YTIV*MIVFGGRRVLNSAAKGFQGSCMS*IVTKIGE 260
+ ++ + V G +LN A KGF C + +++ E
Sbjct: 9 FGLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDE 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,891
Number of Sequences: 5004
Number of extensions: 29648
Number of successful extensions: 81
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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