Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a04
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386           27   5.7  
05_01_0486 - 4047055-4049013                                           27   5.7  
01_01_0204 - 1759488-1759705,1759898-1759982                           27   7.6  

>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
          Length = 1066

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 50  LDYGHLKCAYCNDFSSNS--REACDSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSL 223
           +D GHLK  Y  D SSN       DS+ + +     + ++   N   P  F  +  LQ+L
Sbjct: 577 VDIGHLKQIYKMDLSSNHFLGSLPDSIGQIQMITYLNLSINSFNDSIPNSFGNLTSLQTL 636

Query: 224 LKSHH 238
             SH+
Sbjct: 637 DLSHN 641


>05_01_0486 - 4047055-4049013
          Length = 652

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 368 IHNCLND-RVWWATSFELRSKRFSGFLYELN 279
           +H C+ D + WW   F   S  F  FLY +N
Sbjct: 567 MHLCVEDWKWWWKAFFASGSVAFYVFLYSIN 597


>01_01_0204 - 1759488-1759705,1759898-1759982
          Length = 100

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 38  RGIYLDYGHLKCAYCNDFSSNSREACDSVLKREHTNCK 151
           + I ++ G LKC    +FS +    CD ++K+    CK
Sbjct: 34  KAIDINPGQLKCCSNCNFSFSGLYTCDDIVKKCDPVCK 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,513,583
Number of Sequences: 37544
Number of extensions: 161309
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)