Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a04
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31642| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.090
SB_11667| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-14)                 29   1.1  
SB_35673| Best HMM Match : Ribosomal_L32p (HMM E-Value=8.4)            27   5.9  
SB_26221| Best HMM Match : RVT_1 (HMM E-Value=1.6e-24)                 27   5.9  
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        27   7.8  
SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33)             27   7.8  

>SB_31642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 33.1 bits (72), Expect = 0.090
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = +2

Query: 35  DRGIYLDYGHLKCAYCNDFSSNSREACDSVLKREHTNCKSFNLKHKNFDNPTY------F 196
           D+ I  +YGH+K    N+     +E  +S L+RE T C+     HK  D+  Y       
Sbjct: 77  DKLIISEYGHMK----NELLK-LQEEYESSLQRERTACERLQTVHKEADSKIYRLSQVNE 131

Query: 197 DYVKRLQSLLKSHHFRND-AKTLAY 268
           +    L SL+K  +F  D  K L Y
Sbjct: 132 ELKAELDSLIKESNFSKDKLKRLVY 156


>SB_11667| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-14)
          Length = 348

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 271 WLLFNSYRNPENLLLRSSKLVAHQTRSFKQLCILFG 378
           ++L NS+ NP    LRS +L  H  R FK + ++ G
Sbjct: 287 FMLLNSFTNPLIYCLRSRELRHHMARKFKWVRLVAG 322


>SB_35673| Best HMM Match : Ribosomal_L32p (HMM E-Value=8.4)
          Length = 207

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 83  NDFSSNSREACDSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRL 214
           NDFS  S+     +      NCK + +K  N   P Y   +K L
Sbjct: 138 NDFSQTSKPKEAGIAMDIDYNCKVYIVKKNNLHEPLYPFEIKEL 181


>SB_26221| Best HMM Match : RVT_1 (HMM E-Value=1.6e-24)
          Length = 488

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 194 FDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFCCGVQNSS 334
           FD V   + + K HH+    K L +F +YL+     +T C  VQ ++
Sbjct: 192 FDSVSHARLIHKLHHYGFRGKVLDWFAHYLSD----RTQCTVVQGAT 234


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/63 (30%), Positives = 25/63 (39%)
 Frame = +2

Query: 158 NLKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFCCGVQNSSP 337
           +L H N D    F     L  +  +HH R  ++ L     +   TGT   F C   N   
Sbjct: 148 DLLHCNLDGHEEF-----LDFVTNTHHHRFSSRALTRPFCFKNTTGTKPKFFCRPLNVPE 202

Query: 338 TKH 346
           TKH
Sbjct: 203 TKH 205


>SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33)
          Length = 479

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 134 EHTNCKSFNLKHKNFD-NPTYFDYVKRLQSLLKSHHFRN 247
           +H NCK   LKH     N + ++ V++LQ+ + +    N
Sbjct: 13  QHNNCKQEQLKHSTTTANKSIYNTVQQLQTRVSTTQHNN 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,434,561
Number of Sequences: 59808
Number of extensions: 208639
Number of successful extensions: 579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)