Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a04
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical pr...    31   0.42 
Z71266-3|CAA95840.1|  292|Caenorhabditis elegans Hypothetical pr...    27   3.9  
DQ340625-1|ABC65813.1|  292|Caenorhabditis elegans chondroitin p...    27   3.9  
AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    27   6.9  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical...    26   9.1  
AC024817-55|AAF59563.3|  366|Caenorhabditis elegans Hypothetical...    26   9.1  

>Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical
           protein C49F5.2 protein.
          Length = 708

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 161 LKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGT 298
           L+ K  +NP Y+D +  L      HHF  DAK     G +  H+ T
Sbjct: 519 LREKYKNNPEYYDVLDELSK----HHFHLDAKMQGSVGRFANHSCT 560


>Z71266-3|CAA95840.1|  292|Caenorhabditis elegans Hypothetical
           protein R06C7.4 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 346 VFGGRRVLNSAAKGFQGSCMS*IVTKIGECFSVVSK-VVAL*QTLQPFNIIKVC 188
           VFG     +SA  GF G+C S  +T   +CF+  +K  + L + L  F  ++ C
Sbjct: 219 VFGWPCQEDSACGGFNGACNS--ITATCDCFAAYTKNNLTLAEALTSFCNVETC 270


>DQ340625-1|ABC65813.1|  292|Caenorhabditis elegans chondroitin
           proteoglycan-3 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 346 VFGGRRVLNSAAKGFQGSCMS*IVTKIGECFSVVSK-VVAL*QTLQPFNIIKVC 188
           VFG     +SA  GF G+C S  +T   +CF+  +K  + L + L  F  ++ C
Sbjct: 219 VFGWPCQEDSACGGFNGACNS--ITATCDCFAAYTKNNLTLAEALTSFCNVETC 270


>AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical
           protein F40G9.12 protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 44  IYLDYGHLKCAYCNDFSSNSREACDSVLKREHTNCK 151
           +Y+D G  +C  C      S + C  VL   HT C+
Sbjct: 10  MYIDDGRPECKICYKNYETSGDHCPRVLSCGHTYCE 45


>Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical
           protein C38D9.2 protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +2

Query: 104 REACDSVLKREHTNCKSFNLKHKNFDNP----TYFDYVKRLQSLLKSHHFRNDAKTLAYF 271
           +EA ++ +KR  + C    L +   +      T+FD  +RL  + K HH     + + + 
Sbjct: 468 KEAIETTIKRTESTCTFCGLYNHTSEKCKKFFTWFDRRERLTEMKKCHHCLEVYEPVEFC 527

Query: 272 GYYL-THTGTLKTFC 313
           G  + T+  +  +FC
Sbjct: 528 GAQMHTNCPSEDSFC 542


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 140 TNCKSFNLKHKN--FDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFC 313
           T C++  L H N  F  P +    KR   +    + R++   +   G ++T T  L +F 
Sbjct: 118 TFCETNRLWHTNSMFKKPMH----KRWTFVSPDGNHRHEIDHILANGKFVTDTTVLPSFT 173

Query: 314 CGVQNSSPTKHDHLNNCVYYLE 379
            G  +     + H NNC+  LE
Sbjct: 174 NGSDHRLLRCNLHFNNCLAKLE 195


>U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical
           protein T20H4.2 protein.
          Length = 235

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +2

Query: 35  DRGIYLDYGHLKCA----YCNDFSSNSREACDSVLKREHTNCKSFNLKHKNFDNPTYFDY 202
           D+ ++ + G + C      CN  SSN+R  C    +R  T+      +H+N D+ ++  +
Sbjct: 65  DKPMWKEEGEISCDSESDVCNSSSSNNRSRCRD--RRRRTDYG--RRRHRNSDSRSHERW 120

Query: 203 VKRLQSLLKSHHFRND 250
             R +      +FR D
Sbjct: 121 STRRRQTTPEGNFRCD 136


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 140 TNCKSFNLKHKN--FDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFC 313
           T C++  L H N  F  P +    KR   +    + R++   +   G ++T T  L +F 
Sbjct: 289 TFCETNRLWHTNSMFKKPMH----KRWTFVSPDGNHRHEIDHILANGKFVTDTTVLPSFT 344

Query: 314 CGVQNSSPTKHDHLNNCVYYLE 379
            G  +     + H NNC+  LE
Sbjct: 345 NGSDHRLLRCNLHFNNCLAKLE 366


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 140 TNCKSFNLKHKN--FDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFC 313
           T C++  L H N  F  P +    KR   +    + R++   +   G ++T T  L +F 
Sbjct: 28  TFCETNRLWHTNSMFKKPMH----KRWTFVSPDGNHRHEIDHILANGKFVTDTTVLPSFT 83

Query: 314 CGVQNSSPTKHDHLNNCVYYLE 379
            G  +     + H NNC+  LE
Sbjct: 84  NGSDHRLLRCNLHFNNCLAKLE 105


>Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +2

Query: 2   NYSGQEIDAMVDRGIYLDYGHLKCAYCNDFSSNSREACDSVLKREHTNCKSFNLKHKNFD 181
           N+  + +D +  +   L+  HLK     D   + R A +   + + T CK FNL     D
Sbjct: 550 NFMNKYLDTVTQKPAELESLHLKKI---DVDEDWRTARERFSRIKCTKCKVFNLGELFLD 606

Query: 182 NPTY--FDYVKRLQSLLKSH 235
              Y  FD   +L S + +H
Sbjct: 607 GDVYLTFDRTTKL-SYVDNH 625


>AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +2

Query: 2   NYSGQEIDAMVDRGIYLDYGHLKCAYCNDFSSNSREACDSVLKREHTNCKSFNLKHKNFD 181
           N+  + +D +  +   L+  HLK     D   + R A +   + + T CK FNL     D
Sbjct: 550 NFMNKYLDTVTQKPAELESLHLKKI---DVDEDWRTARERFSRIKCTKCKVFNLGELFLD 606

Query: 182 NPTY--FDYVKRLQSLLKSH 235
              Y  FD   +L S + +H
Sbjct: 607 GDVYLTFDRTTKL-SYVDNH 625


>AC024817-55|AAF59563.3|  366|Caenorhabditis elegans Hypothetical
           protein Y54G2A.28 protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 170 KNFDNPTYFDYVKRLQSLLKSHHFRNDAK 256
           K F +P YFD  K   +L + +HF+N A+
Sbjct: 179 KVFISPPYFDESKNPSTLQQYNHFQNYAQ 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,764,691
Number of Sequences: 27780
Number of extensions: 165001
Number of successful extensions: 552
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)