Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a04
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.44 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.8  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.4  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 62  HLKCAYCNDFSSNSREAC 115
           +LKC  C+ + SN  E C
Sbjct: 147 NLKCDKCSTYQSNGEEVC 164


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 344 VWWATSFELRSKRFSGFLYELNSNQN 267
           V++   FE  S   S  LYEL  NQ+
Sbjct: 300 VFFLAGFETSSTTMSNALYELALNQD 325


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 346 RSFKQLCILFGNKMINL*K 402
           R  K +C L GNK+I + K
Sbjct: 79  RKVKSVCTLDGNKLIQVQK 97


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 152 SFNLKHKNFDNPTYFDYVKR 211
           S+ L  KN+D+PT    +KR
Sbjct: 30  SYLLNCKNYDHPTTLLKLKR 49


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 263 AYFGYYLTHTGTL 301
           AYFG+Y T  G L
Sbjct: 192 AYFGFYDTARGML 204


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 263 AYFGYYLTHTGTL 301
           AYFG+Y T  G L
Sbjct: 192 AYFGFYDTARGML 204


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 275 YYLTHTGTLKTFCC 316
           + +T   T KTFCC
Sbjct: 446 FNVTDGETTKTFCC 459


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,046
Number of Sequences: 438
Number of extensions: 1820
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)