Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5p19
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 82 7e-17
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 31 0.22
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 29 0.51
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 29 0.68
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 27 2.1
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 2.1
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 27 2.1
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 3.6
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 6.3
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.4
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 82.2 bits (194), Expect = 7e-17
Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Frame = +1
Query: 304 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSI 468
WAD+ + G+ P + +N G K + E++ D++ KKVK+ R + I +RV ++
Sbjct: 9 WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAV 65
Query: 469 AKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDGLK-PP 633
A+RK W KFG A G + TT+V E+V ++ + T+KEE Q D+ L K
Sbjct: 66 AERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAKVKA 123
Query: 634 SSNVIFKCRTCQGDHLTLYCPFK 702
+ + +CR C+G+H T CP+K
Sbjct: 124 KGSSVVRCRACKGNHFTAQCPYK 146
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 175 LDTIKRNRNVVTSHHRSLIHRLYT*WLLFTIGQDGRL 65
L+TI RN+V ++H+ +Y WL +T Q G +
Sbjct: 88 LETIAAERNIVIANHQLYSDWMYVWWLSYTAKQHGHV 124
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 340 PPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK 474
PP ++VV+ K D++ + +V TY I K V+ +IAK
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAK 381
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 29.1 bits (62), Expect = 0.68
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Frame = +1
Query: 346 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS----- 510
P E +E + +++++ + + + + T + +R S AK+K +KF D S
Sbjct: 294 PDENIELSTRTLSQWRKNYVERMIALEATKYVRRRGASS--AKKKELNKFFDWESFHPLL 351
Query: 511 ----DKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 633
+K P+ T + +DV TS+ E R GEL GL P
Sbjct: 352 KPWIEKLKPSNNTPSEIDDVLRNIDTSEVEVGRDVQGEL-GLNIP 395
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/81 (24%), Positives = 31/81 (38%)
Frame = +1
Query: 406 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKE 585
NK + + IEK V K AKRK + + G K P E+ + +
Sbjct: 172 NKSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDDLLGQS 231
Query: 586 ESQRPDDGELDGLKPPSSNVI 648
+ D +D P +S+ I
Sbjct: 232 PTACTTDANIDNSIPENSDKI 252
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 2.1
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +1
Query: 313 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI-AKRKTWS 489
EVE+D+ V + V LKIV E KY + + R +E + SI R +
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSIDTIRNELN 165
Query: 490 KFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDG 609
+ D +D + + D F++ + +E ++ DG
Sbjct: 166 ELRDQLND------SESKKLSDKFVEIRSELDEVRKQQDG 199
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 99 HQVYNLWISDLWCDVTTLRFLFIVSSKTSGAFDQTYLSIITSYDKLQN 242
HQ Y+ +D+W ++ TL +S+TS A L T++ KLQN
Sbjct: 405 HQYYDEEFADVWREIDTL-----ANSETSSAIQMVAL---TAFHKLQN 444
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 313 EVEIDQGVLPPPSEVVENGLKIVTEYKY 396
EVE++ V+ P S EN + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 346 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 525
PS + K + KY+N + + I R V+ S R+ + F D +D+P
Sbjct: 50 PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103
Query: 526 NPATTN 543
PA+T+
Sbjct: 104 APASTS 109
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 362 STTSEGGGSTPWSISTSSAQEA*NSSATGMS 270
STTS +TP + S+SS+ + +SS++ S
Sbjct: 131 STTSSSSSATPSTTSSSSSSSSSSSSSSSKS 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,798
Number of Sequences: 5004
Number of extensions: 64193
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -