Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5p19
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1015 + 33512023-33512359,33513550-33514082 81 7e-16
02_05_1014 + 33510108-33510471,33510857-33511362 53 2e-07
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 30 2.2
12_01_0964 + 9685989-9686459 29 5.0
04_04_1575 + 34548774-34549109,34549979-34550185 28 6.6
04_03_0872 + 20452534-20453271 28 6.6
04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944... 28 8.7
>02_05_1015 + 33512023-33512359,33513550-33514082
Length = 289
Score = 81.4 bits (192), Expect = 7e-16
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Frame = +1
Query: 304 WADEVEIDQG----VLPPP--SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---V 456
W + E D+G +LPP S ENG K V EY++D+ KVK+ RT+++ K +
Sbjct: 12 WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71
Query: 457 SKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPS 636
SKS +R++W KFGD+ + G + E V + +++ P D L S
Sbjct: 72 SKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPRAPGSKAEEP-SASGDPLASKS 130
Query: 637 SNVIFKCRTC--QGDHLTLYCPFK 702
V+ CRTC +GDH T CP+K
Sbjct: 131 GAVLMVCRTCGKKGDHWTSKCPYK 154
>02_05_1014 + 33510108-33510471,33510857-33511362
Length = 289
Score = 53.2 bits (122), Expect = 2e-07
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = +1
Query: 343 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---VSKSIAKRKTWSKFGDS 504
PP V+ ENG+K EY+ + + K V++ T ++ + V+K A+R+ W+KFGD+
Sbjct: 36 PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRVTKRAAERRGWAKFGDA 95
Query: 505 ASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCRTCQGDHLT 684
A + T E++ ++ + +D + L ++ ++ + +G H T
Sbjct: 96 AHNDDAGARLTVVSPEEIVLE--RPSAPGSKSEDPLIPALDKGAALMVCRICNAKGKHWT 153
Query: 685 LYCPFK 702
CP K
Sbjct: 154 SKCPNK 159
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +1
Query: 271 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKV-KIVRTYKIEK 447
D + E +A+WA Q VL P + LK D +V + + YKI +
Sbjct: 698 DQELLAEAEAAWAQREWTIQHVLFPSMRLF---LKPPKSMATDGTFVQVASLEKLYKIFE 754
Query: 448 RVVSKSIAKRKTWSKFGDSASDKPGPNPA 534
R + KS K T + F +S P NP+
Sbjct: 755 RSLQKSKRKANTPTNFLESLQTTPDQNPS 783
>12_01_0964 + 9685989-9686459
Length = 156
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 343 VEVHLGQSRPHQPRKPEILQQQACRNIYFIHQLLFCNL--SYEVIIDR 206
VE+ QS Q R +++QQQ C+ + I Q C S +VI+ +
Sbjct: 58 VEIPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAVSSVQVIVQQ 105
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 271 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKI 441
D+PV +F A W + V+ +E E LKIV K D+D +++ YK+
Sbjct: 85 DLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIV---KIDHD-ANPQLIEEYKV 137
>04_03_0872 + 20452534-20453271
Length = 245
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 585 FLTGDELHEDIFSYISSSRVRP 520
F+ GDELHED F + SS P
Sbjct: 31 FVAGDELHEDDFLFSSSPAAPP 52
>04_04_1615 +
34793511-34793660,34794013-34794070,34794163-34794410,
34794485-34794601,34795309-34795369,34795860-34795954,
34796048-34796122,34796316-34796401,34796529-34796578,
34796667-34796707,34796784-34796948,34797204-34797271,
34797362-34797422,34797878-34798393
Length = 596
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 97 AIKCIIYGLVICGVT*LRYDFFLLYPAKQVEHSIKPTY 210
AIKC+ L G + +R D+ +L + H++ PTY
Sbjct: 239 AIKCVFCFLAQFGQSVVRADYLILRKGFIMTHNLAPTY 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,757,796
Number of Sequences: 37544
Number of extensions: 399662
Number of successful extensions: 1053
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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