Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5p14
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.1  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 20  CNLFQFDGICILQSLPPFLAF 82
           C ++  D     +S+PP+L F
Sbjct: 181 CGMYYRDECSFAESIPPYLFF 201


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 20  CNLFQFDGICILQSLPPFLAF 82
           C ++  D     +S+PP+L F
Sbjct: 414 CGMYYRDECSFAESIPPYLFF 434


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 20  CNLFQFDGICILQSLPPFLAF 82
           C ++  D     +S+PP+L F
Sbjct: 414 CGMYYRDECSFAESIPPYLFF 434


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 447 TKRSWKSLKISCRAWQNFITRVDPGW 524
           ++R  K+LK  CR  Q ++     GW
Sbjct: 260 SRRHRKNLKDPCRRRQMYVDFGSVGW 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,999
Number of Sequences: 336
Number of extensions: 3243
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)