Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5p14
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 35 0.009
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 26 4.2
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 5.6
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 5.6
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 26 5.6
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.6
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun... 25 7.4
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 25 7.4
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi... 25 7.4
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po... 25 9.8
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 530 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGAR 634
Q+L +R L+ AG +IGKAG + ELR T +
Sbjct: 92 QQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVK 126
Score = 34.7 bits (76), Expect = 0.012
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 572 GCVIGKAGSKIKELREKTGARLKI 643
GC+IG+ GSKI E+R +G+++ I
Sbjct: 333 GCIIGRGGSKISEIRRTSGSKISI 356
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 46 LHFAIVAAIFSVLILRSNLLLTRFLYLNVYCLCFSALVS---FKRSIKV*SRVTVGAL 210
LH V + S + S L +N+ L SA +S KR++KV S +T+GA+
Sbjct: 126 LHLTSVLFVNSGMWSASTSFLPSSFAMNMVTLALSAQLSPPSTKRTVKVVSFITIGAV 183
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 442 FSCYGEYPFGAGAIWDCYRGF 380
F CY E P G AI C + F
Sbjct: 293 FLCYSEKPNGINAIMKCMKNF 313
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 124 LNVYCLCFSALVSFKRSI 177
L VYC F LVS+KRS+
Sbjct: 521 LAVYCDTFDVLVSYKRSL 538
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = -3
Query: 207 SSYGYPGSH---LY*SFERH*STKA 142
SSY YP SH Y SF+RH S+ +
Sbjct: 158 SSYSYPSSHQDPAYSSFKRHRSSNS 182
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 578 VIGKAGSKIKELREKTGARLKI 643
VIGK GS + LRE G ++ +
Sbjct: 744 VIGKNGSNVSSLREDLGVQINV 765
>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 334 NRKRWQQYIKAQKPVQSLYNSPRLPRPRTGTL 429
N + +Y +KP+Q+ S RL +PRT +
Sbjct: 88 NEDKAMKYGNGKKPIQTQTLSGRLQKPRTNLM 119
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 319 GGWVDNRKRWQQYIKAQKPVQSLYNSPRLP 408
GG +D + W Q +A+ Q Y R+P
Sbjct: 292 GGCIDREEEWIQQFQARCIKQYFYGDDRMP 321
>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
Spa1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 7.4
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = -2
Query: 433 YGEYPFGAGAIWDCYRGFVLASEL*YIAATFSDYRPSHLARYQEGDFIVCLPVP 272
YG P G GA W C A E A F R H+ R+ F CLP P
Sbjct: 55 YGSTPAG-GAEW-CSE----ALERSRPRAAFKQQRRRHVPRWISDSFRTCLPKP 102
>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 306 RKVTSSSVCRCRFWAGPSSPYASRFILMPNKVQSSYGYPG 187
+ V S + + W+ PS+P A ++ + +SY Y G
Sbjct: 38 KAVPSETAAEVKEWSMPSAPTAPKYDVDFTSALNSYKYEG 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,934
Number of Sequences: 5004
Number of extensions: 51439
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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