Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5p14
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 49 3e-06
10_08_0511 + 18435745-18436499,18436624-18436742,18436788-184373... 46 2e-05
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 45 5e-05
03_03_0131 - 14706123-14706171,14706364-14706422,14706504-147067... 44 1e-04
02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179... 40 0.001
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 39 0.003
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 37 0.013
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 36 0.029
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 35 0.067
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 33 0.15
10_08_0948 + 21754985-21755290,21756042-21756297,21756845-217569... 32 0.36
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312... 32 0.36
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 32 0.47
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310... 31 0.62
10_07_0195 + 13972656-13972970,13973518-13973848,13975312-139754... 31 0.82
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 31 0.82
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 28 5.8
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821... 28 7.7
02_01_0703 + 5251901-5251950,5252783-5253554 28 7.7
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Frame = +2
Query: 365 LRSQYKASITV--PDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQEL 538
L+S+ ASI + P+ ERV+ I+A ++ ++ + H++ D+
Sbjct: 269 LQSETGASIKIIEPNSDSEERVIVISAHENSEMMH--SPAQDAVLRVHSRISESSMDKSS 326
Query: 539 DV--RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSN 652
V R+L+ GC++GK GS I E+R+ TGA ++IF N
Sbjct: 327 AVTARLLVPSQHIGCLLGKGGSIIAEMRKITGAGIRIFGN 366
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Frame = +2
Query: 500 HNQGGSRM-GDQELDV------RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSN 652
H GG G++E +V RML + GCV+GK G ++ +R+++GA++++F N
Sbjct: 90 HRVGGDEAAGEEEREVPGVVGCRMLAASGQVGCVLGKGGKTVERMRQESGAQIRVFRN 147
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +2
Query: 527 DQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
+QE+ RM+ G +IGK GS I+ L+ +TGA +KI
Sbjct: 241 EQEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKI 279
>10_08_0511 +
18435745-18436499,18436624-18436742,18436788-18437372,
18438534-18438667,18439128-18439148,18439656-18439739,
18439832-18440077,18440763-18440925,18441024-18441066,
18441392-18441773,18442212-18442267,18442351-18442417,
18442542-18442721
Length = 944
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/80 (22%), Positives = 47/80 (58%)
Frame = +2
Query: 416 ERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 595
ER++ ++++ E + + + L H++ + + +L R+++ ++ GC++G+ G
Sbjct: 557 ERLIVVSSQ--EIPDDPVSPTIEALILLHSKASTLAENHQLTTRLVVPSNKVGCILGEGG 614
Query: 596 SKIKELREKTGARLKIFSNS 655
I E+R +TGA ++++S +
Sbjct: 615 KVITEMRRRTGAEIRVYSKA 634
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/80 (23%), Positives = 46/80 (57%)
Frame = +2
Query: 416 ERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 595
ER++ ++++ E + + + L H++ + + L R+++ ++ GC+IG+ G
Sbjct: 347 ERLIVVSSQ--EIPDDPVSPTIEALILLHSKVSTLAENHHLTTRLVVPSNKVGCIIGEGG 404
Query: 596 SKIKELREKTGARLKIFSNS 655
I E+R +TGA ++++S +
Sbjct: 405 KVITEMRRRTGAEIRVYSKA 424
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 545 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIF-SNSAPQ 664
R+L+ ++ GC++GK GS I++LR TGA +++ S + PQ
Sbjct: 165 RILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQ 205
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = +2
Query: 530 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
+E +++L G VIGK+G ++++ ++TGA +++
Sbjct: 300 EEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQV 337
>03_03_0131 -
14706123-14706171,14706364-14706422,14706504-14706770,
14706857-14707114,14707207-14707629,14707942-14708514
Length = 542
Score = 44.0 bits (99), Expect = 1e-04
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Frame = +2
Query: 287 DDEV-TFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPG--PERVLSI--TAEDDE 451
DD V +L PS+ +R+ +A I + + ERV++I ++ +
Sbjct: 38 DDTVYRYLCPSRKIGSIIGRGGEIAKQMRADTQAKIRIGESVSGCDERVITIFSSSRETN 97
Query: 452 TLVEIIKDIMPC---LAEFHNQGG--SRMGDQELD-------VRMLIHQSRAGCVIGKAG 595
TLV+ + P L H + +G++E D VR+L+ + GC+IGK G
Sbjct: 98 TLVDAEDKVCPAQDALFRVHEKLSIDDDIGNEESDEGLAQVTVRLLVPSDQIGCIIGKGG 157
Query: 596 SKIKELREKTGARLKIFSN 652
I+ +R TGA +++ SN
Sbjct: 158 HIIQGIRSDTGAHIRVLSN 176
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 545 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFS 649
R+L+ SR GC+IGK GS I E+R + A ++I S
Sbjct: 368 RLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILS 402
>02_05_1263 +
35316083-35316185,35317167-35317220,35317665-35317903,
35317989-35318089,35318390-35318583,35318885-35319003,
35319624-35319749,35320081-35320142,35320265-35320348,
35320580-35320664
Length = 388
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 542 VRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
+R L+ + AGC+IGK GS I E + ++GAR+++
Sbjct: 61 LRFLVSNTAAGCIIGKGGSTINEFQSQSGARIQL 94
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 554 IHQSRAGCVIGKAGSKIKELREKTGARLKI 643
I G V+G+AG I E+ + +GAR+KI
Sbjct: 291 IADEHIGAVVGRAGRNITEIIQASGARIKI 320
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 509 GGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQ 664
G + G ++ + ML+ ++ G +IGK G IK L+ ++GAR+++ P+
Sbjct: 239 GSGQSGSEQFE--MLVPDNKVGLIIGKGGETIKTLQTRSGARIQLIPQHPPE 288
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +2
Query: 506 QGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
+GG G QE + + ++ G +IGK+G I+ L+ +GA+++I
Sbjct: 143 EGGGAPG-QETSRIINVPNNKVGVLIGKSGETIRNLQMNSGAKIQI 187
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +2
Query: 425 LSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKI 604
L+++A D + + I + ++P + ++ S EL +R+L + G VIGK G I
Sbjct: 283 LTVSA-DAHSRLPIYQSVLPVIPAYNTPKCSG----ELVLRVLCPAGKIGLVIGKGGVTI 337
Query: 605 KELREKTGARLKI 643
K +R+++GAR+ +
Sbjct: 338 KSIRKESGARIDV 350
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 572 GCVIGKAGSKIKELREKTGARLKIFSNSAPQ 664
GC+IGK GS + ++R KT A + I P+
Sbjct: 398 GCLIGKGGSIVNDMRSKTKAAIYISKGEKPR 428
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 515 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
+R D E + +L+ S++ VIGK+G+ IK LR + A +K+
Sbjct: 139 TRDSDDE-EANILVPASQSASVIGKSGAVIKRLRSTSKAFIKV 180
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 35.9 bits (79), Expect = 0.029
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +2
Query: 545 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFS 649
R+++ ++ GC++GK GS I E+R+ +GA + + S
Sbjct: 501 RLIVSPNQVGCLLGKGGSIIAEMRKLSGAHIIVLS 535
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +2
Query: 545 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
R+L S++G VIGK G I ++R++TG ++++
Sbjct: 91 RILCPTSKSGNVIGKGGGIIAKIRQETGVKIRV 123
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 34.7 bits (76), Expect = 0.067
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 545 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
+M I ++ G VIGK G IK ++ K+GAR+++
Sbjct: 261 QMKIANNKVGLVIGKGGETIKSMQAKSGARIQV 293
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 506 QGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
Q S G Q + I R G +IGK+G IK L+ ++GA++++
Sbjct: 154 QYSSYGGYQGTSKTIEIPNGRVGVIIGKSGETIKNLQLQSGAKIQV 199
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +2
Query: 530 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
++ ++L+ ++A +IGK G +IK ++E TGA +KI
Sbjct: 205 EKCSAKLLVPSAQATHLIGKQGVRIKSIQETTGATVKI 242
>10_08_0948 +
21754985-21755290,21756042-21756297,21756845-21756999,
21757077-21757349,21757582-21757776,21757867-21758058
Length = 458
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +2
Query: 545 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFS 649
R+L+ ++A +IGK G+ IK ++E TGA +++ S
Sbjct: 152 RLLVPGAQAINLIGKQGASIKAIQEGTGATIRVIS 186
>03_05_0388 +
23726957-23727418,23730016-23730262,23731072-23731220,
23731313-23731597,23731665-23731889,23734251-23734445
Length = 520
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 545 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
R+LI + G +IG+ G IK++ E++ AR+KI
Sbjct: 111 RILIPAQKVGAIIGRKGEFIKKMCEESKARIKI 143
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 545 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
R+L+ + G VIG+ G IK++ E++ AR+K+
Sbjct: 118 RILVPAQKVGAVIGRKGEFIKKMCEESRARIKV 150
>06_03_0766 -
24425486-24426245,24430766-24430855,24430951-24431070,
24431568-24431746,24432046-24432231,24432454-24432547,
24432679-24432743,24433652-24433987
Length = 609
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 545 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSA 658
++ + S AG +IGK G+ K + TGA+L I N +
Sbjct: 484 KISVDASLAGGIIGKGGTNTKHISRMTGAKLAIRDNES 521
>10_07_0195 +
13972656-13972970,13973518-13973848,13975312-13975463,
13975573-13976280,13976424-13976615,13977264-13977425
Length = 619
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 545 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
RMLI ++ G VIG +G +++ L E+T A +++
Sbjct: 62 RMLIPATKVGAVIGHSGERLRRLCEETKACVRV 94
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 31.1 bits (67), Expect = 0.82
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +2
Query: 533 ELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
++ R+++ + GC++GK G I+++R +T ++I
Sbjct: 186 KVTTRLIVPRLHVGCLLGKGGKIIEQMRAETKTHIRI 222
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 428 SITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQSRA 571
+I +DD ++ ++ P L+E N G +LD ++L HQ +A
Sbjct: 1258 NICLDDDILDPSLLANLAPELSELKNSGSVWSAISDLDPKLLPHQRKA 1305
>06_01_1195 +
10280864-10280979,10281024-10281115,10281211-10282156,
10282378-10283075,10283140-10284068
Length = 926
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 449 ETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTG 628
E + ++ DI CLAEF GS+ Q+L L H+ R I S+++E+ ++
Sbjct: 97 EQVRDLSFDIEDCLAEFMVHVGSKSLSQQL--MKLKHRHRIAIQIRDLKSRVEEVSDRNS 154
Query: 629 ARLKIFSNS 655
I N+
Sbjct: 155 RYSLISPNT 163
>02_01_0703 + 5251901-5251950,5252783-5253554
Length = 273
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 545 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 643
++ + S AG +IG+ G K++ TGA+L I
Sbjct: 147 KISVDASLAGGIIGRGGVNTKQISRVTGAKLAI 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,763,165
Number of Sequences: 37544
Number of extensions: 362103
Number of successful extensions: 888
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -