Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5p13
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.42 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    20   9.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   9.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   9.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 299 MERMLQPCGPPPEKPED 349
           ME  L PC  P  KP+D
Sbjct: 126 METTLTPCASPNRKPDD 142


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 342 LKIKHFDCKNRIKLIYLLFSLNPLS*HKFEKK 437
           L +KHF  + +++   LLF    +    FE K
Sbjct: 313 LAVKHFSVEGQLEFRALLFVPRRVPFDLFENK 344


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 87  KIKWVKDTTF 116
           K+KW+KD  F
Sbjct: 412 KMKWIKDNGF 421


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 318 HAAHRPKSLKIKHFDCKNRIKLIYLLFSLNPLS*H 422
           H AHRP    + H    N     Y    +NP + H
Sbjct: 29  HVAHRPGLQGLHHSPHLNHAMHPYHANHVNPTANH 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,748
Number of Sequences: 336
Number of extensions: 1939
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)