Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5p13
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-3|AAA62525.1|   87|Caenorhabditis elegans Hypothetical pr...    36   0.017
Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical...    27   6.0  
U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine rec...    27   7.9  

>U21317-3|AAA62525.1|   87|Caenorhabditis elegans Hypothetical
           protein B0495.6 protein.
          Length = 87

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 98  GERYNIHSQLEHLQSKYIGT 157
           GER+++ +QLEHLQSKY GT
Sbjct: 5   GERFHVLAQLEHLQSKYTGT 24


>Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical
           protein R04B5.8 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -1

Query: 316 LKHSFHQIEFYARFRFIFYDRKVTQQIRMTHVTAARVAMLVHKPFIFCSV 167
           L+ +   +  +A     +Y  K+    +++ V   R  ++VH P IFC++
Sbjct: 97  LRDASSMVALFAIVHVFYYRYKILSHQKLSSVQIMRNFIIVHLPAIFCAI 146


>Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical
           protein F25H8.6 protein.
          Length = 599

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 327 HRPKSLKIKHFDCKNR-IKLIYLLFSLNPLS*HKFEKK 437
           HRP  L  K F    R   L     S+ PL  HKF+KK
Sbjct: 315 HRPSDLGTKMFFSSPRTFNLTSAFSSITPLEDHKFQKK 352


>AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical
           protein Y32B12B.3 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 385 ISLILFLQSKCLIFRLFGRWAAWLKHSFHQIEFYARFRFIFYDRKV 248
           I L++F     + +  FG W A  KHS   +E     + +F ++KV
Sbjct: 229 IPLLVFRYFPTVNYYNFGPWTAVFKHSGFTVEAIILRKLLFREKKV 274


>AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical
           protein R06B10.2 protein.
          Length = 1014

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 47  N*NINDFNKHLA-FKNKMGERYNIHSQLEHLQSKYI 151
           N  ++D   HL  FK+   E YN+++Q +HL++ +I
Sbjct: 141 NIKLSDMAPHLPKFKDWTLEEYNVYAQNQHLRNIHI 176


>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.2 protein.
          Length = 1140

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 47  N*NINDFNKHLA-FKNKMGERYNIHSQLEHLQSKYI 151
           N  ++D   HL  FK    E+YN+++Q +HL++ +I
Sbjct: 377 NIELSDMASHLPKFKYWTLEKYNVYAQNQHLRNIHI 412


>U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein56 protein.
          Length = 298

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 331 RWAAWLKHSFHQIEFYARFRFIFYD 257
           ++  W+  SF  I FY +F +I+YD
Sbjct: 124 KFIVWIFISFVAILFYEKFCYIYYD 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,367,754
Number of Sequences: 27780
Number of extensions: 179675
Number of successful extensions: 459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)