Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5p13
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   0.84 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   1.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   4.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   4.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   5.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 233 PDLLSYFAIVENESKARVKFNLM 301
           P+LL YFA +    K + + NL+
Sbjct: 830 PNLLRYFASIATNPKEQAQLNLL 852


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 213 QESRCWFISHSYFV 172
           +++R W I+HSYF+
Sbjct: 223 EQNRSWRITHSYFM 236


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 32  YQY*LN*NINDFNKHLAFKN 91
           Y+Y    N N++NK L +KN
Sbjct: 89  YKYSNYNNYNNYNKKLYYKN 108


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 47  N*NINDFNKHLAFKN 91
           N N N++NK L +KN
Sbjct: 335 NNNYNNYNKKLYYKN 349


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/37 (24%), Positives = 14/37 (37%)
 Frame = +2

Query: 71  KHLAFKNKMGERYNIHSQLEHLQSKYIGTGHADTTKY 181
           K+    N +G R     +     S+Y  + H D   Y
Sbjct: 209 KYAISSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 209 SCCSYMGHPDLLSYFAI 259
           S CSYM H  L   F++
Sbjct: 339 SSCSYMAHEKLSYAFSV 355


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 78  LPLKIKWVKD 107
           LPL I W+KD
Sbjct: 639 LPLSISWLKD 648


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 47  N*NINDFNKHLAFKN 91
           N N N++NK L +KN
Sbjct: 105 NYNNNNYNKKLYYKN 119


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 53  NINDFNKHLAFKN 91
           N N++NK L +KN
Sbjct: 332 NYNNYNKKLYYKN 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,658
Number of Sequences: 438
Number of extensions: 2150
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)