Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5p11
         (171 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66...    27   2.8  
06_01_0694 - 5065505-5065624,5065675-5065691,5066216-5066363,506...    26   3.8  
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449     26   3.8  
01_01_0094 - 730484-731570,732030-732715                               26   5.0  

>08_01_0091 +
          664913-664985,665281-665576,667197-667311,667901-667971
          Length = 184

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -2

Query: 77 MRELSDIKLKRTDTTL 30
          M  +SDIKL RTDTTL
Sbjct: 1  MAHISDIKLIRTDTTL 16


>06_01_0694 -
           5065505-5065624,5065675-5065691,5066216-5066363,
           5066492-5066830
          Length = 207

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = -1

Query: 138 WSEPRTSRHLTKISL---IYW 85
           W+ P TSRHL  I+L   +YW
Sbjct: 147 WNNPFTSRHLETINLLACVYW 167


>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
          Length = 604

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 164 FAGPTRDRSGASPELPVI*QKSV*YTGPAMRELSDIKLKRTDT 36
           F+ P R R  +SP  P     S  +  P+MR   ++K +R  +
Sbjct: 223 FSSPQRQRKSSSPHSPRSPDDSPRFGFPSMRTPGNLKARRASS 265


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 144 QEWSEPRTSRHLTKISLIYWSR 79
           Q+W +P +  HL+ IS  +W R
Sbjct: 20  QQWCQPFSCGHLSNISHPFWRR 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,609,984
Number of Sequences: 37544
Number of extensions: 64866
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)