Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5p11
         (171 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    26   4.1  
U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z69385-8|CAA93423.1|  529|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 121 FPSFNKNQFNILVPQCGNFQILS*KEQILHFDLSQKAEKR 2
           F SFN+NQ  +    C   Q+ S    I+  +L   A KR
Sbjct: 128 FASFNRNQTQLFAWNCSKLQLRSHHHCIMDPNLRPVAVKR 167


>U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical
           protein D2092.5 protein.
          Length = 908

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 102 FLLNDGKFGARSTP 143
           FL+N GKFGA S P
Sbjct: 890 FLMNKGKFGAPSQP 903


>Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical
           protein T25B9.4 protein.
          Length = 546

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 134 ASPELPVI*QKSV*YTGPAMRELSDIKLKRTDTTL 30
           A PEL  I +KS+    PA R+   + +K+ +T L
Sbjct: 356 APPELNEIVKKSIYQLDPAKRDTMKVIVKKLETWL 390


>Z69385-8|CAA93423.1|  529|Caenorhabditis elegans Hypothetical
           protein ZK593.9 protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 134 ASPELPVI*QKSV*YTGPAMRELSDIKLKRTDTTL 30
           A PEL  I +KS+    PA R+   + +K+ +T L
Sbjct: 339 APPELNEIVKKSIYQLDPAKRDTMKVIVKKLETWL 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,000,788
Number of Sequences: 27780
Number of extensions: 60490
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)