Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5p11
         (171 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   1.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   5.5  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    19   7.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   7.3  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    18   9.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   9.7  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      18   9.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    18   9.7  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 102 FLLNDGKFGARSTPVT 149
           F ++DG FG   +PVT
Sbjct: 248 FTVHDGIFGMALSPVT 263


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 127 PNFPSFNKNQFNILVPQ 77
           PNFPS    Q  + +PQ
Sbjct: 233 PNFPSSGHWQDQMSLPQ 249


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 125 ELPVI*QKSV*YTGPAMRELS 63
           E PV+ Q S  YT P  +++S
Sbjct: 66  ETPVVSQGSDSYTAPDGQQVS 86


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
          protein.
          Length = 500

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 30 KCSICSFQLNI*KFPHCGT 86
          K  +CS  L++   P CG+
Sbjct: 32 KSLVCSPDLSVFTSPACGS 50


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 133 RAPNFPSFNKNQFNILVP 80
           R P    F KN+  ++VP
Sbjct: 60  RCPPGSKFIKNRCRVIVP 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 68  LSDIKLKRTD 39
           LSD+ +KRT+
Sbjct: 837 LSDLSIKRTE 846


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 133 RAPNFPSFNKNQFNILVP 80
           R P    F KN+  ++VP
Sbjct: 60  RCPPGSKFIKNRCRVIVP 77


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 102 FLLNDGKFGARSTPVT 149
           F   DG FG   +P+T
Sbjct: 248 FTAQDGIFGMALSPMT 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,161
Number of Sequences: 438
Number of extensions: 744
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)