Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5o23
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 64 2e-11
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 56 6e-09
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 37 0.003
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 33 0.029
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.81
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 1.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.3
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 7.6
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 25 10.0
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 63.7 bits (148), Expect = 2e-11
Identities = 45/150 (30%), Positives = 73/150 (48%)
Frame = +1
Query: 121 EMLQKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDR 300
E + V++S+ L ++H E+MG + G+V GA + I+ S L ++ R
Sbjct: 30 EFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQGKVE--GASLIILDSFALP-VEGTETR 86
Query: 301 VEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASF 480
V EE + +V+ L V + V+GWYHSHP+ W S VD+ TQ Q+ F
Sbjct: 87 VNAHEEAQ-EYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPF 145
Query: 481 VGIIFAVFLTDQSTKAPSVQITCFQSINEG 570
V ++ +S ++P V I F++ G
Sbjct: 146 VAVVLD---PKRSLESPYVNIGAFRTYPVG 172
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 55.6 bits (128), Expect = 6e-09
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Frame = +1
Query: 136 VRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEISE 315
V +SS L ++H E+MGL++GE D+ V V + + + V +
Sbjct: 30 VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFT----VRVVDVFAMPQSGTGVSVEA 85
Query: 316 -EQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGII 492
+ + Q + ++ + G+P VVGWYHSHP W S VD+ TQ ++++ V ++
Sbjct: 86 VDPVFQKNMM--DMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVV 143
Query: 493 FAVFLTDQSTKAPSVQITCFQSIN 564
QS K V I F+ IN
Sbjct: 144 VDPI---QSVKG-KVVIDAFRLIN 163
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 376 LRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGIIFA 498
L +GW H+HP T + S VDL T YQ M + I+ A
Sbjct: 334 LLTLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMA 374
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 33.5 bits (73), Expect = 0.029
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +1
Query: 193 KEEIMGLLIGEVHDNGALVSIVSSVILR-RLDKKPDRVEISEEQLVQATVRAEELAAEVG 369
K ++G+L+G+ +NG +V++ +S + D+K V + +++ E+ ++
Sbjct: 39 KRRVVGILLGQ--NNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESM---NEMFKKIN 93
Query: 370 QPLRVVGWYHSHPHITVWPSHVDL 441
++VGWYH+ P + PS +++
Sbjct: 94 ANEKLVGWYHTGPQLR--PSDLEI 115
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.81
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = -3
Query: 389 PTTLRGWPTSAANSSALTVA*TSCSS-DISTRSGFLSKRRSITDDTIETSAPLS*TSPIS 213
P+T P+S+ SS +T +S SS S+ S F S +I+ +S P S S +S
Sbjct: 519 PSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIP-STFSSVS 577
Query: 212 KPMISSFSVDNACCIQTKATSDDKRTFCSIS 120
+ SS S ++ + ++S TF S S
Sbjct: 578 SILSSSTSSPSSTSLSISSSSTSS-TFSSAS 607
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 27.5 bits (58), Expect = 1.9
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 424 PSHVDLATQSMYQRMDAS-FVGIIFAVFLTDQSTKAPSVQITCFQSINEGASQSRIEIEM 600
P + LA ++Y M S F G+ +V L + +V FQSI SR ++
Sbjct: 377 PFQIALALSNLYHLMGYSAFTGVAASVILFPCNIIVANVYKK-FQSILMKNKDSRSKLMT 435
Query: 601 EIVTNTDSLLTNNFET 648
EI+ N S+ +ET
Sbjct: 436 EIINNIRSIKLYAWET 451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -3
Query: 353 NSSALTVA*TSCSSDISTRSGFLSKRRSITDDTIETSAPLS*TSPISKPMISSFSVD-NA 177
NSS L TSC++ S +G S + T+ ++ S + PI P S+ S D N+
Sbjct: 218 NSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPI--PPTSTSSTDTNS 275
Query: 176 CCIQTKATS 150
+ T +TS
Sbjct: 276 SPLPTTSTS 284
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 235 NGALVSIVSSVILRRLDKKPDRVEISEEQLVQATVRAEELAAEVGQPLRVV 387
N LV + S I L++ D ++I E+L+Q+ R +AA + PL+++
Sbjct: 399 NPELVEAIISYINSLLNQGMDWLDI--EKLIQSQKRRSPVAAAIQIPLKLI 447
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 10.0
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 260 DTIETSAPL-S*TSPISKPMISSFSVDNACCIQTKATSDDKRTFCSISKFIFVIVMRLNV 84
D++E +AP S + K + + + D+A Q DD T C+ SK ++ ++
Sbjct: 502 DSLEFAAPYQSELNNYLKTLAEASATDSAISQQYALVKDDVETLCNSSKISALLESSISS 561
Query: 83 T 81
T
Sbjct: 562 T 562
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,172
Number of Sequences: 5004
Number of extensions: 43828
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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