Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5o22
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    27   2.1  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    26   6.6  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    25   8.7  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   8.7  

>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 443 HVSAYNTATECHDVVVWLDRSELG 372
           H   Y+ A +C DVVV  D SE+G
Sbjct: 41  HKPIYHPAADCGDVVVVTDCSEIG 64


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 307 SPLIVVSSEIDYNLSCILLLLITRI 233
           SP++ +S+++ YN+  IL  ++ +I
Sbjct: 199 SPIVPISAQLKYNIDAILEYIVKKI 223


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 608 QMSAS-VSRKTPGCGAVMSRPSHQNRFRPANTSHLRVTRRDAIAPCPAAP 462
           +M+A+ VS    GC     R     +FR  NTS       +A++PC A P
Sbjct: 60  RMTATIVSNHNVGCSCCYFRQYSTKQFRDLNTS-------EALSPCKAEP 102


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 341 EVNINSEDTLNLVHSYRATLLHRDI 415
           +VNI+ E T +  HS  A  LHRD+
Sbjct: 471 DVNISKEFTSSFRHSKAAHNLHRDL 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,861
Number of Sequences: 5004
Number of extensions: 49088
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)