Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5o22
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523... 35 0.079
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156... 33 0.18
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 33 0.24
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109... 32 0.56
09_04_0416 - 17399059-17399777,17400560-17400704 31 0.74
04_04_0225 + 23745404-23747788 30 1.7
09_06_0184 - 21413275-21414267 30 2.2
05_04_0343 - 20437780-20438009,20438576-20438666 29 3.9
04_01_0559 - 7175828-7176195,7176262-7176973,7178028-7178201,717... 29 3.9
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 29 5.2
04_04_0024 - 22216105-22217856 29 5.2
06_01_1123 + 9257674-9258126,9258205-9258972 28 6.9
07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961 28 9.1
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453... 28 9.1
>10_02_0094 -
5228472-5228703,5229040-5229133,5230627-5230675,
5231229-5231321,5231404-5231635,5232416-5232506,
5232693-5232784,5232862-5232970,5233331-5233430,
5233614-5233754,5233846-5234010,5234088-5234279,
5234409-5234537,5234619-5234734,5234821-5234965,
5235039-5235102,5235241-5235463,5235584-5236244,
5236909-5237250
Length = 1089
Score = 34.7 bits (76), Expect = 0.079
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 617 HVPQMSASVSRKTPGCGAVMSRPSHQNRFRPANTSHLR 504
H+P S S R+ G GA++ RP H+ R P H R
Sbjct: 25 HLPLCSPSPRRRHAGGGALLLRPPHRRRAEPGGVRHAR 62
>11_01_0199 +
1563483-1563572,1563673-1563852,1564091-1564402,
1564753-1564800,1565205-1565438,1565632-1566219
Length = 483
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 505 RKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAF 636
R ++V+ G N F C GRL+ P LL++ LI G A+ F++
Sbjct: 21 RLYQVWKGNNIFLCGGRLIIGPDAASLLLSMFLILGP-AIVFSY 63
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 496 RVTRKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAF 636
RV R+ RF C GRL+ P +LT++LI AL AF
Sbjct: 40 RVRRRGPCMHAGERFLCGGRLIFGPDASSIVLTVSLIMTPLALFVAF 86
>01_06_1472 -
37609732-37609851,37609883-37610104,37610542-37610922,
37612583-37612816,37613589-37613738,37613831-37614016,
37615058-37615120
Length = 451
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 505 RKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAF 636
R +E + G NRF+ GRL+ P L ++ALI A+ AF
Sbjct: 12 RVYEAWKGNNRFFFGGRLIFGPDAKSLLFSVALIFVPVAVFCAF 55
>09_04_0416 - 17399059-17399777,17400560-17400704
Length = 287
Score = 31.5 bits (68), Expect = 0.74
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = -2
Query: 651 QEGTVEREVQRA--RAADERQCEQEDAGVRCSHEPP--VAPEPVSPREHFPLARHAPRRH 484
QEG +E R R+ +R+ +E A R PP AP P+ P +P RH
Sbjct: 188 QEGRPSKEEIRGVDRSWKKREAGEEGAAARWGERPPDLAAPPPLRPAP-------SPPRH 240
Query: 483 RTMSCRSHS 457
R+ CR S
Sbjct: 241 RSARCRRRS 249
>04_04_0225 + 23745404-23747788
Length = 794
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 GTEVNINSEDTLNLVHSY-RATLLHRDILWQYYMLKRELETREWE 466
GTE+ I S ++V+ Y RATL + QY K+E TR W+
Sbjct: 230 GTEITITSTIMGSMVNYYQRATLDPDGVFRQYVYPKKEAVTRGWK 274
>09_06_0184 - 21413275-21414267
Length = 330
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -2
Query: 633 REVQRARAADERQCEQEDAGVRCSHEPPVAPEPVSPREHFPLARHAPRRHRTMSC 469
R+V R +AD + E + EPPV+P P P P+A RR ++ C
Sbjct: 173 RDVPRHESADGSEIHDEHHVIITGEEPPVSPVPREP----PVAHVRNRRPISLLC 223
>05_04_0343 - 20437780-20438009,20438576-20438666
Length = 106
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +1
Query: 529 RNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFD 639
R WCDG + P FLL A ICG A A D
Sbjct: 3 RPHAWCDG----STSPAAFLLAAAAICGQFATGLAGD 35
>04_01_0559 -
7175828-7176195,7176262-7176973,7178028-7178201,
7178814-7178891
Length = 443
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 529 RNRFWCDGRLMTAPHPGVFLLTLALIC 609
RNR+W R PG LLTL +C
Sbjct: 77 RNRYWKTPRFAVVDEPGSRLLTLQFLC 103
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 484 MASRRVTRKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALI 606
MA + R ++V+ G N C GR + P LL+ +LI
Sbjct: 1 MAMAKQQRVYQVWKGNNIILCGGRFIFGPDAKATLLSFSLI 41
>04_04_0024 - 22216105-22217856
Length = 583
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = -3
Query: 566 AVMSRPSHQNRFRPANTSHLRVTRRDAIAPCPAAPTLAFPT-HVSAYN---TATECHDVV 399
A + RP H FR + S L +APC ++ F H S + +A C ++
Sbjct: 92 AALLRPRHLPGFRRIDPSPLAAAAALRLAPCASSALAVFTALHCSPLSITPSAHSCQQII 151
Query: 398 VWLDRS 381
V L RS
Sbjct: 152 VVLCRS 157
>06_01_1123 + 9257674-9258126,9258205-9258972
Length = 406
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = -3
Query: 566 AVMSRPSHQNRFRPANTSHLRVTRRDAIAPCPA-----APTLAFPTHVSAYNTATECHDV 402
A SRPS RF P+ S R RR A A C P A + Y T C ++
Sbjct: 26 ASASRPSFLRRFEPSIASLPRAARRAAPADCDIFRGEWVPATAADDGAAPYYTNATCGEI 85
>07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961
Length = 221
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -2
Query: 555 PPVAPEPVSPREHFPLARHA-PRRHRTMSCRSHSRV 451
PP AP P PR FP AR P HR + R+
Sbjct: 7 PPSAPPPSPPRAVFPSARCCLPSPHRFLPSTRRKRL 42
>05_04_0438 +
21244735-21244782,21245089-21245274,21245307-21245384,
21245385-21245678,21246137-21246262,21246935-21247168,
21247534-21248061
Length = 497
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 505 RKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALI 606
R +E + G NRF GRL+ P L++++LI
Sbjct: 7 RVYEAWKGNNRFLFGGRLIFGPDAKSLLVSVSLI 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,658,303
Number of Sequences: 37544
Number of extensions: 317422
Number of successful extensions: 1153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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