Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5o22
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-2|CAA21738.1|  368|Caenorhabditis elegans Hypothetical ...    56   3e-08
Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical...    29   4.6  
U53151-5|AAB37068.1|  476|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>AL032657-2|CAA21738.1|  368|Caenorhabditis elegans Hypothetical
           protein Y47H9C.2 protein.
          Length = 368

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 23/49 (46%), Positives = 32/49 (65%)
 Frame = +1

Query: 505 RKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFL 651
           RKW+   GRNRF C GRL+ +   G F++T+ L+  T  ++F FD PFL
Sbjct: 39  RKWQSHPGRNRFGCGGRLVCSRSHGAFVVTVILMIATLTVYFVFDAPFL 87


>Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -2

Query: 648 EGTVEREVQRARAADERQCEQEDAGV-RCSHEPPVAPEPVSPREHFPLARHAPRRHRTMS 472
           E T+  +V R   A +++ +Q+D  V     E  V P P  P    P++R  P R R+M+
Sbjct: 215 EPTIYEDVSRKEEAPKKEPKQQDHVVPEPPREKSVPPPPPPPPPPKPVSRE-PSRARSMT 273

Query: 471 CRSHSR 454
             +  R
Sbjct: 274 PGTRER 279


>AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -2

Query: 648 EGTVEREVQRARAADERQCEQEDAGV-RCSHEPPVAPEPVSPREHFPLARHAPRRHRTMS 472
           E T+  +V R   A +++ +Q+D  V     E  V P P  P    P++R  P R R+M+
Sbjct: 215 EPTIYEDVSRKEEAPKKEPKQQDHVVPEPPREKSVPPPPPPPPPPKPVSRE-PSRARSMT 273

Query: 471 CRSHSR 454
             +  R
Sbjct: 274 PGTRER 279


>U53151-5|AAB37068.1|  476|Caenorhabditis elegans Hypothetical
           protein T05B11.4 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 328 LKNFLKISPLIVVSSEIDYNLSCILLLLITRILFQNK 218
           + NFLKI  L+ +     + L  ILLLL+   +F NK
Sbjct: 9   IDNFLKICSLVEMQRIYQFILIIILLLLLVFDIFTNK 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,512
Number of Sequences: 27780
Number of extensions: 284066
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)