Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5o09
         (287 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   0.75 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   1.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   3.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   3.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   7.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   9.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 108 IKADLIPDENDP 143
           +K +LIPD+NDP
Sbjct: 190 LKDNLIPDKNDP 201


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 121 KSALILLELSDIMVVACKFNKLI 53
           KS + ++ELSD+    CK N+ +
Sbjct: 389 KSKMEVMELSDLHHPNCKINRKV 411


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 231 EQKDDFMNAIKPFETLKK 284
           + K+ F N  K F +LKK
Sbjct: 454 KDKNSFFNMFKKFASLKK 471


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 231 EQKDDFMNAIKPFETLKK 284
           + K+ F N  K F +LKK
Sbjct: 454 KDKNSFFNMFKKFASLKK 471


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 113 SRFNTR*KRS*KRYVTSEQRAR 178
           S FNT  + + KR +T   RAR
Sbjct: 326 SIFNTEFREAFKRILTKGARAR 347


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 216 PLTTPEQKDDFMNAIKPFE 272
           PLT   ++ +F+   KPF+
Sbjct: 522 PLTINPERAEFIEFSKPFK 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,053
Number of Sequences: 438
Number of extensions: 1130
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)