Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5o06
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...   155   3e-39
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...   153   1e-38
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    32   0.043
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    30   0.23 
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   2.8  
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac...    26   3.7  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   4.9  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    25   4.9  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   4.9  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    25   6.5  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   6.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   6.5  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   6.5  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   8.6  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   8.6  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score =  155 bits (377), Expect = 3e-39
 Identities = 71/122 (58%), Positives = 95/122 (77%)
 Frame = +3

Query: 102 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMLNIGYGSNKKTRHMLP 281
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+ VRRRF+G   M  IGYG+NKKTR+ +P
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 282 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 461
           NG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++RS
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRS 125

Query: 462 QE 467
           QE
Sbjct: 126 QE 127


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score =  153 bits (372), Expect = 1e-38
 Identities = 71/122 (58%), Positives = 94/122 (77%)
 Frame = +3

Query: 102 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMLNIGYGSNKKTRHMLP 281
           IVKKRTK F RHQSD + ++  +WRKPRGID+ VRRRF+G   M  IGYG+NKKTR+ +P
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 282 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 461
           NG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++RS
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRS 125

Query: 462 QE 467
           QE
Sbjct: 126 QE 127


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 32.3 bits (70), Expect = 0.043
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
 Frame = -2

Query: 317 FNIVN*DLTESIWEHMTGLLVGTVTNVEHQVLTLEPPADSVVNTSRF-TPIPLKFV--IA 147
           F+I + D+ ++   H+ G  + ++T +E+    +    DS +    + TP+P+KFV  IA
Sbjct: 381 FDIRSPDIVQAYDHHLGG--INSITFLENGKRFVTTSDDSSMRFWEYGTPVPIKFVADIA 438

Query: 146 IRLMPDKSLRP 114
           +  MP  +LRP
Sbjct: 439 MHSMPRVALRP 449


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 470 VLLGAEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 348
           VL  ++   R+ HSD + + +F DQ   +RR  +  LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 282 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 455
           N  R+  +HN++ ++ L+ Q  ++C +    V     ++  ++  A ++ + + ++A   
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654

Query: 456 RSQENE 473
           R +  +
Sbjct: 655 RRESQK 660


>SPAC1250.04c |atl1||alkyltransferase-like protein
           Atl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 53  SKRNIQDGYKTCLQADNRQKEDEEIYQASIG 145
           SKR+I  G +   Q D  ++E  EIYQ S+G
Sbjct: 67  SKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 296 LTESIWEHMTGLLVGTV-TNVEHQVLTLE 213
           L ES+ EH+ GLL+ T+  N E+ V  L+
Sbjct: 698 LAESLLEHILGLLIETLKRNTENTVAILK 726


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 215 QGSILDAQHWLRFQQEDPSYAPKWIP*GPSS 307
           +G  + A+ +LRFQQ+   +  +W+   P S
Sbjct: 175 KGKRMKAKPFLRFQQKYQQFTHRWLEFAPQS 205


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 228 LMLNIGYGSNKKTRHMLPNGFRKVLVHNVKE 320
           ++ NIGYG+ K +   +    +K  +H++ E
Sbjct: 533 ILYNIGYGNPKASNDEIVEAAKKAKIHDIIE 563


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = -2

Query: 248 VTNVEHQVLTLEPPADSVVN------TSRFTPIPLK 159
           ++N +H    LEPP   V+N      + R TP P+K
Sbjct: 149 ISNPDHVFEGLEPPKSGVINDLLAQISRRLTPQPIK 184


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 62  NIQDGYKTCLQADNRQKEDEEIYQASIGS 148
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 126 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMLNIGYG 251
           F  H  D YD+L  NW++   ++    +RFK      NI  G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 62  NIQDGYKTCLQADNRQKEDEEIYQASIGS 148
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 494 LIIQLYLFVLLGAEASGRI 438
           LIIQL+ F L+G E  G++
Sbjct: 921 LIIQLFTFYLIGFEEEGKM 939


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 354 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 440
           C  + HGV   + K ++ER    +   +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,171
Number of Sequences: 5004
Number of extensions: 37992
Number of successful extensions: 116
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)