Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5o06
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   165   2e-41
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    33   0.16 
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    31   0.48 
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode ast...    28   4.5  
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  165 bits (401), Expect = 2e-41
 Identities = 74/124 (59%), Positives = 102/124 (82%)
 Frame = +3

Query: 102 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMLNIGYGSNKKTRHMLP 281
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   M  IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 282 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 461
           NG++KVLV NVK+L++L+MQ+ KY  EI HGVS+K RK IVERA QL+I++TN  ARLR+
Sbjct: 71  NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLRT 130

Query: 462 QENE 473
           +E+E
Sbjct: 131 EESE 134


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
 Frame = +3

Query: 90  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMLNIGYGSNKK 263
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+++  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 264 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 437
             + L    +K+  ++  ++              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 438 NAAARLRSQENE 473
                +   +NE
Sbjct: 121 GKTQFVAPLQNE 132


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
 Frame = +3

Query: 90  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMLNIGYGSNKK 263
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+++  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 264 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 437
             + L    +K+  ++  ++              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 438 NAA 446
             A
Sbjct: 121 FVA 123


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 222 QYLMLNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQN 344
           QYLM NI        R   P+GF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
            K07G5.3 protein.
          Length = 1202

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -2

Query: 215  EPPADSVVN-TSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVCFF*KRD-- 45
            E P +S+   T R++ +P  +++ +R+  ++ ++  FD+ R       HLV     R+  
Sbjct: 1058 EEPLESIQTATVRYSKLPEDWIVELRISLEREIKIRFDESRKHAIPQWHLVAARQLREIL 1117

Query: 44   SEPRGDT 24
              PRG T
Sbjct: 1118 ENPRGIT 1124


>AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode
           astacin protease protein32 protein.
          Length = 651

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 461 GAEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVLPVLHHQDF 324
           G E +G   H  A  LG FH Q+   R D V+     +P    Q+F
Sbjct: 282 GCEVTGTAAHEIAHTLGLFHTQMRSDRDDYVTIDLTDVPESSQQNF 327


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 299 DLTESIWEHMTGLLVGTVTNVEHQVLTL 216
           DLT  +W+  TG  +GT+ + E QV  L
Sbjct: 60  DLTIRLWQLSTGKCIGTIPHNEGQVNAL 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,908,854
Number of Sequences: 27780
Number of extensions: 218555
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)