Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5o04
         (714 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016279-1|AAH16279.2|  268|Homo sapiens centromere protein Q pr...    32   1.8  
AL590668-2|CAI14313.1|  268|Homo sapiens protein ( Human DNA seq...    32   1.8  
AL590244-3|CAI13088.1|  268|Homo sapiens protein ( novel gene, a...    32   1.8  
AK001407-1|BAA91672.1|  138|Homo sapiens protein ( Homo sapiens ...    32   1.8  

>BC016279-1|AAH16279.2|  268|Homo sapiens centromere protein Q
           protein.
          Length = 268

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +1

Query: 358 SMAVTLEGSQETADEV-LARVKRAVD--ARGTGLKINKVRKAKNQTIILGCDTEEERKKV 528
           S  + +E +++ A+E  LA ++  +D     T L    ++  KN+  IL  + EEE ++V
Sbjct: 138 SSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLKNKIQILASEVEEEEERV 197

Query: 529 QEIIESRGDGLVVAPMKNKSPL 594
           +++ +    G++  P  ++  L
Sbjct: 198 KQMHQINSSGVLSLPELSQKTL 219


>AL590668-2|CAI14313.1|  268|Homo sapiens protein ( Human DNA
           sequence from clone RP11-463L20 on chromosome 6 Contains
            the MUT gene for methylmalonyl Coenzyme A mutase snd
           the 5' end of a).
          Length = 268

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +1

Query: 358 SMAVTLEGSQETADEV-LARVKRAVD--ARGTGLKINKVRKAKNQTIILGCDTEEERKKV 528
           S  + +E +++ A+E  LA ++  +D     T L    ++  KN+  IL  + EEE ++V
Sbjct: 138 SSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLKNKIQILASEVEEEEERV 197

Query: 529 QEIIESRGDGLVVAPMKNKSPL 594
           +++ +    G++  P  ++  L
Sbjct: 198 KQMHQINSSGVLSLPELSQKTL 219


>AL590244-3|CAI13088.1|  268|Homo sapiens protein ( novel gene, a
           novel gene,  ).).
          Length = 268

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +1

Query: 358 SMAVTLEGSQETADEV-LARVKRAVD--ARGTGLKINKVRKAKNQTIILGCDTEEERKKV 528
           S  + +E +++ A+E  LA ++  +D     T L    ++  KN+  IL  + EEE ++V
Sbjct: 138 SSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLKNKIQILASEVEEEEERV 197

Query: 529 QEIIESRGDGLVVAPMKNKSPL 594
           +++ +    G++  P  ++  L
Sbjct: 198 KQMHQINSSGVLSLPELSQKTL 219


>AK001407-1|BAA91672.1|  138|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10545 fis, clone NT2RP2001675. ).
          Length = 138

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +1

Query: 358 SMAVTLEGSQETADEV-LARVKRAVD--ARGTGLKINKVRKAKNQTIILGCDTEEERKKV 528
           S  + +E +++ A+E  LA ++  +D     T L    ++  KN+  IL  + EEE ++V
Sbjct: 8   SSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLKNKIQILASEVEEEEERV 67

Query: 529 QEIIESRGDGLVVAPMKNKSPL 594
           +++ +    G++  P  ++  L
Sbjct: 68  KQMHQINSSGVLSLPELSQKTL 89


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.313    0.131    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,059,552
Number of Sequences: 237096
Number of extensions: 1955398
Number of successful extensions: 3218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3218
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)