Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5o02
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 29 0.52
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 28 1.2
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 28 1.2
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 2.1
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 27 2.8
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch... 26 4.8
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 4.8
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 25 6.4
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 25 6.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 6.4
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 25 8.5
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 8.5
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 25 8.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 8.5
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 25 8.5
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 296 PSARRPLPVLSQTYEVLGNKHSESERN 216
P RPLPVL QT E+L K E E+N
Sbjct: 152 PDTVRPLPVLKQTLELLKKKWKE-EKN 177
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 247 SVTNTPNLSVMLLHVAGSNSRAWYTCRLWLSASYTPSLLS 128
++ TP + + ++ V GS + TC + AS +P+ LS
Sbjct: 481 TIIETPEIGIAIVAVLGSLTAVILTCYFYFFASSSPASLS 520
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 486 KFPRSNPIKQSPPP*RSHY*IQRTKNIFSYPRD 584
K P S+P+ +PP H + R ++F+Y D
Sbjct: 168 KVPVSHPLPPTPPSREEHVSVPRESSLFTYEDD 200
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 330 LRHHSQLAPRCPECKAP 280
L +H Q +PRC CK P
Sbjct: 308 LDYHEQFSPRCKHCKTP 324
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = -3
Query: 409 DARYENIAG*RSVP----HSFR-MPHDARPHTTPSLTAGAPVSR 293
+AR E G S P H F +PH P T PSL G+ + R
Sbjct: 441 NARVEKSTGQPSTPLNRQHYFNELPHSTTPVTLPSLIHGSEIDR 484
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 223 SVMLLHVAGSNSRAWYTCRLWLS 155
SV +LH+ GSNS TCR L+
Sbjct: 686 SVFMLHLNGSNSTTGETCRSTLN 708
>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 127 DPQLATQASSNAGFMASFGRS 65
DP+ A QA++ G + +FGR+
Sbjct: 315 DPETAVQAANERGVLVAFGRN 335
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 200 SDVQQHYAQIRSVCYRELHMSGSGREAGALH 292
S VQQ +Q R CY L M + E +LH
Sbjct: 365 SSVQQARSQFRGYCYDYLFMHCNNGEKTSLH 395
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 300 TGAPAVSDGVVWGLASWGIRKLCGTERY 383
TGAP+ S+ + WG ++ K +RY
Sbjct: 174 TGAPSFSEAMRWGAETYHTLKSIAKKRY 201
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -1
Query: 111 PKHRR--TRASWPRLEDQRRERDVKIIRR 31
PK +R TRAS+ R ++QR++ +K +++
Sbjct: 437 PKRKRITTRASYDRQKEQRKKEYIKKVKK 465
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 408 SPSNLDFITNATNYLLSEKRQYPFI 482
+PS L+F+ +A YL +E + FI
Sbjct: 511 NPSELEFLEHARQYLANESKYNEFI 535
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 281 PLPVLSQTYEVLGNKHSESERNVVARRWVQQ 189
PLPV Q+ V+ ++H+E+E + RR VQ+
Sbjct: 262 PLPVPLQS--VMDSEHNENEPRALKRRKVQK 290
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -2
Query: 584 ITRVAKYIFSTLDLVVRSLWR--RGLFYRI 501
+ KYIF+ L + SLWR GL YR+
Sbjct: 497 LVNALKYIFNILAQMFLSLWRIHPGLKYRV 526
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 69 LPNEAMKPAFDDAWVASWGS 128
LP++ PAF +AW ++G+
Sbjct: 139 LPSDVATPAFLEAWTTAYGN 158
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 193 NSRAWYTCRLWLSASYTPSLLSDPQLATQASSNAGFMAS 77
N+R T +WLS +Y+PS+L A N F AS
Sbjct: 1513 NTRPRSTPSVWLSQAYSPSVLQG-TTENVAFLNKAFSAS 1550
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 379 RSVPHSFRMPHDARPHTTPSLTAGAPVSRVQGARFPS*ARHMKFSVTNTPNLS 221
RS S P+ R T S G+P+ R G R+ S + H K S + ++S
Sbjct: 465 RSSSQSNIEPNGVRSPT--SSPTGSPIRRTSGNRWSSGSSHSKKSAQRSVSMS 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,497
Number of Sequences: 5004
Number of extensions: 57425
Number of successful extensions: 198
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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