Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5o02
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.57 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.57 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.57 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.0  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.2  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 154 QTATACRYTRLGCWTQRRATTLRSDSECLLPRTSYV 261
           + AT  R   LG  T    TTL S +   LP+ SYV
Sbjct: 246 RNATPARVA-LGVTTVLTMTTLMSSTNAALPKISYV 280


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 154 QTATACRYTRLGCWTQRRATTLRSDSECLLPRTSYV 261
           + AT  R   LG  T    TTL S +   LP+ SYV
Sbjct: 246 RNATPARVA-LGVTTVLTMTTLMSSTNAALPKISYV 280


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 154 QTATACRYTRLGCWTQRRATTLRSDSECLLPRTSYV 261
           + AT  R   LG  T    TTL S +   LP+ SYV
Sbjct: 185 RNATPARVA-LGVTTVLTMTTLMSSTNAALPKISYV 219


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 527 WRRGLFYRIRSREFVD 480
           W+  +FY++  R F+D
Sbjct: 25  WKNAIFYQVYPRSFMD 40


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 160 ATACRYTRLGCWTQRRATTLRSDSECLLPRTSYV 261
           AT+ R   LG  T    TT+ +     LPR SYV
Sbjct: 269 ATSARVA-LGITTVLTMTTISTGVRSSLPRISYV 301


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 165 CGCLHRTHRPSCQIPSLLPKHRRTRAS 85
           C    R+   SCQ+  +  +HR T  S
Sbjct: 374 CNISPRSSADSCQVGIMAQRHRDTIVS 400


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 332 MGPCVVGHTETMRHRT 379
           +GP V+G   TM H T
Sbjct: 26  VGPYVIGLMNTMTHTT 41


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 332 MGPCVVGHTETMRHRT 379
           +GP V+G   TM H T
Sbjct: 25  VGPYVIGLMNTMTHTT 40


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 178 TRLGCWTQRRATTLRS 225
           T LGCW + R    R+
Sbjct: 322 TALGCWNENRPLKRRN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,175
Number of Sequences: 438
Number of extensions: 3816
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)