Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5n21
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.6  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 421 TVHGNGTYSVLSQVLRHLQDQAGRSILHLKG 329
           T HG    +VL++   H  D  G  ++H+ G
Sbjct: 179 TPHGWMRRNVLNKQHVHFHDYTGSVVIHVVG 209


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +2

Query: 104 KNIIEMFPTVCRVGRLATKTVVNNATEKASLVTGAAVNKRDYAAKA 241
           +N++     VC++        + +ATE A    G  +  R  A +A
Sbjct: 764 RNVLVNAALVCKIADFGLSREIESATEGAYTTRGGKIPVRWTAPEA 809



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 347 RSPRLVLEVAQHLGENTVRTIAMDGTE 427
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 412 GNGTYSVLSQVLRHLQDQAGRSILHLKGI 326
           G+ TY+     L+H++ +AG +++  KGI
Sbjct: 177 GSWTYNGAQVDLKHMKQEAGSNLV-AKGI 204


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 416 DGTEGLVRGQPVLDSGSPI 472
           DGTEG+ +   VL    PI
Sbjct: 193 DGTEGIAKSGDVLVETEPI 211


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 412 GNGTYSVLSQVLRHLQDQAGRSIL 341
           G+ TY      LRH+ +++G +++
Sbjct: 172 GSWTYDGFKVDLRHMDEKSGSNVV 195


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 412 GNGTYSVLSQVLRHLQDQAGRSIL 341
           G+ TY      LRH+ +++G +++
Sbjct: 172 GSWTYDGFKVDLRHMDEKSGSNVV 195


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 457 VEYGLPTD*AFSTVHGNGTY 398
           +EY  P D   +T+  NG Y
Sbjct: 27  IEYNFPNDNIRNTLISNGDY 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,350
Number of Sequences: 438
Number of extensions: 3944
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)