Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5n10
(729 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 479 e-134
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 209 5e-53
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 203 3e-51
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 203 4e-51
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 200 2e-50
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 196 3e-49
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 193 3e-48
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 191 1e-47
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 188 2e-46
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 185 9e-46
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 181 1e-44
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 176 5e-43
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 175 7e-43
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 77 4e-13
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 74 4e-12
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 74 4e-12
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 66 1e-09
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 65 1e-09
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 64 3e-09
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 64 3e-09
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 64 4e-09
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 63 6e-09
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 63 8e-09
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 60 5e-08
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 60 7e-08
UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep... 60 7e-08
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 59 1e-07
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 58 3e-07
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 57 4e-07
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 57 5e-07
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 56 7e-07
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 56 1e-06
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 54 4e-06
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 54 5e-06
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 53 6e-06
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 53 8e-06
UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|... 52 1e-05
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 52 1e-05
UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replica... 48 2e-04
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 48 2e-04
UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Rep... 48 3e-04
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 47 5e-04
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 46 7e-04
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 46 7e-04
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 46 0.001
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 46 0.001
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 46 0.001
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 44 0.003
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 44 0.005
UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 43 0.007
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 43 0.009
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 40 0.082
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 37 0.44
UniRef50_Q8RBN3 Cluster: Folylpolyglutamate synthase; n=5; Clost... 36 1.3
UniRef50_A3ETY4 Cluster: ATP-dependent exonuclease V, alpha subu... 36 1.3
UniRef50_A6FPW0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_A4BXQ6 Cluster: Putative uncharacterized protein; n=1; ... 35 2.3
UniRef50_Q5EUJ4 Cluster: Terminal acidic SANT 1; n=7; Poaceae|Re... 35 2.3
UniRef50_UPI000038D0BD Cluster: COG0507: ATP-dependent exoDNAse ... 34 3.1
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 34 3.1
UniRef50_Q1ING2 Cluster: O-antigen polymerase precursor; n=1; Ac... 34 3.1
UniRef50_Q4QB05 Cluster: Putative uncharacterized protein; n=3; ... 34 4.1
UniRef50_A4R6U0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_A3T1S5 Cluster: ABC phosphate/phosphonate transport sys... 33 5.4
UniRef50_Q54HS1 Cluster: Putative uncharacterized protein; n=1; ... 33 5.4
UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi... 33 7.2
UniRef50_Q52T94 Cluster: Putative uncharacterized protein; n=1; ... 33 7.2
UniRef50_A7RQA9 Cluster: Predicted protein; n=1; Nematostella ve... 33 7.2
UniRef50_Q4P5W5 Cluster: Putative uncharacterized protein; n=1; ... 33 7.2
UniRef50_UPI00015B6117 Cluster: PREDICTED: similar to CG14749-PA... 33 9.5
UniRef50_Q9IF44 Cluster: RNA-dependent RNA polymerase; n=15; Ben... 33 9.5
UniRef50_Q9NX53 Cluster: CDNA FLJ20433 fis, clone KAT03767; n=3;... 33 9.5
UniRef50_Q751M7 Cluster: AGL330Wp; n=2; Saccharomycetaceae|Rep: ... 33 9.5
UniRef50_A6UQ83 Cluster: SCP-like extracellular precursor; n=1; ... 33 9.5
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 479 bits (1182), Expect = e-134
Identities = 227/243 (93%), Positives = 232/243 (95%)
Frame = +1
Query: 1 RVSYRHGEHLNTIGPDDAPLLSLIYTGDGSIGHWAADDSPLSAPLSPIRGSAKTLNSFAS 180
RVSYRHGEHLNTIGPDDAPLLSLIYTGDGSIGHWAAD+SPLS P SPIRGSAKTLNSFAS
Sbjct: 723 RVSYRHGEHLNTIGPDDAPLLSLIYTGDGSIGHWAADESPLSPPPSPIRGSAKTLNSFAS 782
Query: 181 TAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRL 360
TAIRFRDSHGNLLPFRQVHEY LCKPRAK + +NETDGVIQS+LR ASSDPTFFHRL
Sbjct: 783 TAIRFRDSHGNLLPFRQVHEYKLCKPRAK-IWPQHENETDGVIQSSLRAASSDPTFFHRL 841
Query: 361 DQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMK 540
DQRADF PQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMK
Sbjct: 842 DQRADFAPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMK 901
Query: 541 LPSSEVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
LPSS+ WRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY
Sbjct: 902 LPSSDAWRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 961
Query: 721 SSV 729
SSV
Sbjct: 962 SSV 964
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 209 bits (511), Expect = 5e-53
Identities = 108/205 (52%), Positives = 137/205 (66%), Gaps = 3/205 (1%)
Frame = +1
Query: 118 PLSAP-LSPIRGSAKTLNSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNE 294
PL+ P +PI + FA A+RFR + LP RQVH Y++ PRAKNL SN+KN
Sbjct: 947 PLTPPGFTPITEPTPATSPFALAALRFRLNR-QPLPIRQVHAYSIALPRAKNLVSNLKNG 1005
Query: 295 TDGVIQSTLRTASSDPT-FFHRLDQRADFPP-QVSVQLIHITGFPGCGKTFPVTQLLKTK 468
DG++ S + ++ LD ADFPP + V LIHI GF GCGK++P+ QLL T+
Sbjct: 1006 FDGLVSSLPASDRTNLLPLIQALDHTADFPPARPPVGLIHIAGFAGCGKSYPIQQLLATQ 1065
Query: 469 AFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAPVLVIDEVYKMPRGFL 648
F+ +RV PTTELR EWK +KL WRVSTWET+L K A VLVIDEVYK+PRG+L
Sbjct: 1066 TFR-HFRVVTPTTELRHEWKRALKLEGPSSWRVSTWETALAKRASVLVIDEVYKLPRGYL 1124
Query: 649 DLALVADPALQFVILLGDPCQTVYS 723
DLAL+ADP ++FVI+LGDP Q Y+
Sbjct: 1125 DLALLADPTVEFVIILGDPLQGSYN 1149
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 203 bits (496), Expect = 3e-51
Identities = 112/219 (51%), Positives = 139/219 (63%), Gaps = 5/219 (2%)
Frame = +1
Query: 85 GSIGHWAADDSPLSAPLSPIRGSAKTLNSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRA 264
G H+ A D PL A P R NS + + FR +GNLLP QVH +T RA
Sbjct: 762 GPPAHFTAPD-PLRAGSPPSRSQTNE-NSLRRSLLGFR-LNGNLLPIDQVHSFTSEPSRA 818
Query: 265 KNLASNMKNETDGVIQS--TLRTASSDPTFFHR---LDQRADFPPQVSVQLIHITGFPGC 429
KNLASNMKN DG++ + L + SS P+ R LD DF +V LIH++GF GC
Sbjct: 819 KNLASNMKNGFDGILTTLAALSSLSSGPSPRDRIFTLDGICDFALPKTVDLIHLSGFAGC 878
Query: 430 GKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAPVL 609
GKT P+ QLLKT F +RV PTT LRSEWK M LP+ WR STWE++L+K A +L
Sbjct: 879 GKTHPIQQLLKTPHFHN-FRVVTPTTNLRSEWKSDMALPAHHNWRFSTWESALLKHAEIL 937
Query: 610 VIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 726
VIDE+YK+PRG+LDL+L+ADP ++ VILLGDP Q Y S
Sbjct: 938 VIDEIYKLPRGYLDLSLIADPTVKLVILLGDPLQGEYHS 976
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 203 bits (495), Expect = 4e-51
Identities = 115/241 (47%), Positives = 145/241 (60%), Gaps = 1/241 (0%)
Frame = +1
Query: 7 SYRHGEHLNTIGPDDAPLLSLIYTGDGSIGHWAADDSPLSAPLSPIRGSAKTLNSFASTA 186
++ EH+ +G DA + +I GS G L + G A A
Sbjct: 795 NFHSAEHVIQLGMADATSIFMINHTAGSAGLPGHFSLRLGDQPRALNGGLA--QDLAVAA 852
Query: 187 IRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTF-FHRLD 363
+RF S G+LLP R VH Y RAKNL SNMKN DGV+ S SD LD
Sbjct: 853 LRFNIS-GDLLPTRSVHTYRSWPKRAKNLVSNMKNGFDGVMASINPIRPSDAREKIVALD 911
Query: 364 QRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKL 543
D SV+LIHI GFPGCGKT P+T+LL T AF+ +++AVPTTELRSEWK+ MKL
Sbjct: 912 GLLDIARPRSVRLIHIAGFPGCGKTHPITKLLHTAAFR-DFKLAVPTTELRSEWKELMKL 970
Query: 544 PSSEVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYS 723
S+ WR TWE+SL+KSA +LVIDE+YK+PRG+LDLA+ +D +++FVI LGDP Q Y
Sbjct: 971 SPSQAWRFGTWESSLLKSARILVIDEIYKLPRGYLDLAIHSDSSIEFVIALGDPLQGEYH 1030
Query: 724 S 726
S
Sbjct: 1031 S 1031
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 200 bits (489), Expect = 2e-50
Identities = 105/219 (47%), Positives = 141/219 (64%), Gaps = 2/219 (0%)
Frame = +1
Query: 76 TGDGSIGHWAADDSPLSAPLSPI-RGSAKTLNSFASTAIRFRDSHGNLLPFRQVHEYTLC 252
T I H A + S S R + A A+RF + G LLP R VH Y+
Sbjct: 975 TSSFDIDHTAGNPGHFSLRQSATPRLNGGIAQDLAVAALRF-NIDGTLLPIRSVHVYSTW 1033
Query: 253 KPRAKNLASNMKNETDGVIQSTLRTASSDPTF-FHRLDQRADFPPQVSVQLIHITGFPGC 429
RAKNL+SNMKN DG++ + T +++ LD + D + SV+LIHI GFPGC
Sbjct: 1034 PKRAKNLSSNMKNGFDGIMANIHPTKTNESREKILALDSQLDIAVRRSVRLIHIAGFPGC 1093
Query: 430 GKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAPVL 609
GK+FP+++LL+T F+ ++VAVPT ELR+EWK + LP+SE WR+ TWE+SL+KSA VL
Sbjct: 1094 GKSFPISRLLRTPTFRN-FKVAVPTVELRAEWKAIIGLPTSEAWRIGTWESSLLKSARVL 1152
Query: 610 VIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 726
VIDE+YKMPRG++DLA+ +DP ++ VI LGDP Q Y S
Sbjct: 1153 VIDEIYKMPRGYIDLAIHSDPTIEMVIALGDPLQGEYHS 1191
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 196 bits (479), Expect = 3e-49
Identities = 98/202 (48%), Positives = 136/202 (67%), Gaps = 5/202 (2%)
Frame = +1
Query: 136 SPIRGSAKTLNSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQS 315
+P ++ + +RF+ + + LPFRQVH+++ AKNL SNMKN DG++ S
Sbjct: 778 APKAANSNRCTDYGRLMLRFK-YNDSYLPFRQVHKFSPSLSHAKNLISNMKNGFDGIL-S 835
Query: 316 TLRT--ASSDPTFFHR---LDQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKG 480
T+ T +SS P+ R LD D V L+HI GFPGCGKT P+ QLLKT+AF
Sbjct: 836 TIDTPSSSSGPSPRERIYALDSICDVARTRCVDLVHIAGFPGCGKTHPLQQLLKTRAFSN 895
Query: 481 QYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLAL 660
+R++ PTTELR+EWK MK E W+ STWE+SL+K P+LVIDE+YK+PRG+LDL++
Sbjct: 896 -FRISCPTTELRNEWKADMKPNPEEFWKFSTWESSLLKKGPILVIDEIYKLPRGYLDLSI 954
Query: 661 VADPALQFVILLGDPCQTVYSS 726
+ADP+++FV++LGDP Q Y S
Sbjct: 955 IADPSIEFVVILGDPLQGEYHS 976
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 193 bits (471), Expect = 3e-48
Identities = 93/194 (47%), Positives = 127/194 (65%), Gaps = 1/194 (0%)
Frame = +1
Query: 148 GSAKTLNSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRT 327
GS + ++ A+RF+ + LPF H++T+ P AKNL SNMKN DG+
Sbjct: 810 GSNPSKSNLVRAALRFKYNDA-FLPFWDAHQHTISVPHAKNLISNMKNGFDGITSQLSGP 868
Query: 328 ASSDPTF-FHRLDQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPT 504
++ P LD D +IHI GFPGCGK+ P+ +LL+T AF+ +R++VPT
Sbjct: 869 SNKSPKMKLLELDATIDVSFPRKCDVIHIAGFPGCGKSHPIQKLLQTPAFR-HFRLSVPT 927
Query: 505 TELRSEWKDHMKLPSSEVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQF 684
ELRSEWK + LP SEVWR+ TWET+L KS+ +LV+DE+YK+PRG+LDL L+ADP++Q
Sbjct: 928 NELRSEWKRDLNLPESEVWRLCTWETALFKSSNILVVDEIYKLPRGYLDLILLADPSIQL 987
Query: 685 VILLGDPCQTVYSS 726
VI+LGDP Q Y S
Sbjct: 988 VIMLGDPLQGEYHS 1001
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 191 bits (466), Expect = 1e-47
Identities = 102/202 (50%), Positives = 128/202 (63%), Gaps = 7/202 (3%)
Frame = +1
Query: 142 IRGSAKTLNSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTL 321
+RG+A A+ F+ + LPFR+VH YT RAKNL SNMKN DGV+
Sbjct: 837 LRGAASDTKELNRAALGFKFKNA-FLPFRKVHVYTTEPDRAKNLISNMKNGFDGVL---- 891
Query: 322 RTASSDPTFFHR-------LDQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKG 480
A+ DP H LD + V LIH+ GFPGCGKT P+ LLKT F
Sbjct: 892 --ANIDPNHPHEARDRLLALDGSIEVHAPRKVSLIHLAGFPGCGKTKPIQALLKTSLF-A 948
Query: 481 QYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLAL 660
Y+VAVPT ELR+EWK + L + + WR+STWE+SL+K+A +LVIDEVYKMPRG++DLA+
Sbjct: 949 DYKVAVPTVELRAEWKADLALKTGQAWRLSTWESSLLKTASILVIDEVYKMPRGYVDLAV 1008
Query: 661 VADPALQFVILLGDPCQTVYSS 726
ADP ++FVILLGDP Q Y S
Sbjct: 1009 AADPTVRFVILLGDPLQGEYHS 1030
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 188 bits (457), Expect = 2e-46
Identities = 92/178 (51%), Positives = 121/178 (67%), Gaps = 5/178 (2%)
Frame = +1
Query: 208 GNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQ----ST-LRTASSDPTFFHRLDQRA 372
GN LPF + H + AKNL SNMKN DGV+ ST RT + ++D
Sbjct: 902 GNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLDVSTGQRTGPTPKERIIQIDHYL 961
Query: 373 DFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSS 552
D P + ++H GF GCGKT+P+ QLLKTK FK +RV+ PTTELR+EWK M+L S
Sbjct: 962 DTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFK-DFRVSCPTTELRTEWKTAMELHGS 1020
Query: 553 EVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 726
+ WR +TWE+S++KS+ +LVIDE+YKMPRG+LDL+++ADPAL+ VI+LGDP Q Y S
Sbjct: 1021 QSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHS 1078
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 185 bits (451), Expect = 9e-46
Identities = 102/231 (44%), Positives = 137/231 (59%), Gaps = 1/231 (0%)
Frame = +1
Query: 37 IGPDDAPLLSLIYTGDGSIGHWAADDSPLSAPLSPIRGSAKTLNSFASTAIRFRDSHGNL 216
+G +DA + I GS GH+ + + P+ A+ RF+ G +
Sbjct: 914 MGMEDATSIFTIRHTSGSPGHFEL----VRSSARPLLNGARPAADIVEHMKRFKVD-GKI 968
Query: 217 LPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTF-FHRLDQRADFPPQVS 393
LPF + H YT RAKNL SNMKN DGV+ + +++ LD D +
Sbjct: 969 LPFCEAHSYTSHVGRAKNLISNMKNGFDGVLANIDPQHTNEARDRLLSLDGSLDIAKPRT 1028
Query: 394 VQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVST 573
V LIHI GF GCGK+FP+ QLLKTK + Y++AVPT ELR+EWKD +K ++ WR+ T
Sbjct: 1029 VSLIHIAGFAGCGKSFPICQLLKTKPCRN-YKIAVPTVELRNEWKDSLKSSPADRWRLGT 1087
Query: 574 WETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 726
WE+SL+KSA ++VIDEVYK+PRG+LDLA+ AD Q I+LGDP Q Y S
Sbjct: 1088 WESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHS 1138
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 181 bits (441), Expect = 1e-44
Identities = 98/185 (52%), Positives = 119/185 (64%), Gaps = 1/185 (0%)
Frame = +1
Query: 175 ASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVI-QSTLRTASSDPTFF 351
A RF +LPFR VH + RAKNL SNMKN DGV+ Q+ S F
Sbjct: 830 AEACKRFVAPDRTVLPFRDVHIHRTDVRRAKNLISNMKNGFDGVMAQANPLDPKSARERF 889
Query: 352 HRLDQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKD 531
LD D V+LIHI GF GCGK++P++ LL+T AF+ +++AVPTTELR EWK
Sbjct: 890 LMLDSCLDIAAPRRVRLIHIAGFAGCGKSWPISHLLRTPAFR-VFKLAVPTTELRDEWKA 948
Query: 532 HMKLPSSEVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQ 711
M + WR TWE+SL+K+A VLVIDEVYKMPRG+LDLA+ AD A+QFVILLGDP Q
Sbjct: 949 LMDPRDQDKWRFGTWESSLLKTARVLVIDEVYKMPRGYLDLAIHADAAIQFVILLGDPIQ 1008
Query: 712 TVYSS 726
Y S
Sbjct: 1009 GEYHS 1013
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 176 bits (428), Expect = 5e-43
Identities = 90/184 (48%), Positives = 120/184 (65%), Gaps = 3/184 (1%)
Frame = +1
Query: 184 AIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRL- 360
A+RF+ +G LPF Q + + AKNL SNMKN DG++ S+L +S P+ +L
Sbjct: 887 ALRFK-LNGEFLPFTQAYAHESSITHAKNLISNMKNGFDGIM-SSLTDSSKGPSPREKLT 944
Query: 361 --DQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDH 534
D D V LIHI GF GCGKT P+ +LL+T F +R++ PT ELRSEWK
Sbjct: 945 TLDSLIDVAAPREVSLIHIAGFAGCGKTHPIQKLLQTSPFH-DFRISCPTNELRSEWKRD 1003
Query: 535 MKLPSSEVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQT 714
M+ + VWR STWE+SL+K + +LVIDE+YK+PRG+LDL+++ADP L VI+LGDP Q
Sbjct: 1004 MQPTAENVWRFSTWESSLLKHSEILVIDEIYKLPRGYLDLSILADPTLSLVIILGDPLQG 1063
Query: 715 VYSS 726
Y S
Sbjct: 1064 EYHS 1067
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 175 bits (427), Expect = 7e-43
Identities = 97/234 (41%), Positives = 133/234 (56%), Gaps = 5/234 (2%)
Frame = +1
Query: 40 GPDDAPLLSLIYTGDGSIGHWAADDSPLSAPLSPIRGSAKTLNSFASTAIRFRDSHGNLL 219
G A + IY +G H++ + + P + + A+RF+ G+ L
Sbjct: 877 GLQSAKTVIHIYHTNGPPAHYSPPPKIIGSNSPP----SSQQHPLEQAALRFK-YQGSHL 931
Query: 220 PFRQVHEYTLCKPRAKNLASNMKNETDGV---IQSTLR--TASSDPTFFHRLDQRADFPP 384
PF H +T AKNL SNMKN DGV I+ ++R S F LD D
Sbjct: 932 PFSSFHSFTTSVQHAKNLISNMKNGFDGVMSTIEPSIRHQPGHSPREKFIALDAMIDLAR 991
Query: 385 QVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWR 564
+V + H+ GF GCGKT P+ LL T+ F +RV+ PTTELR+EWK M LP+S+ +R
Sbjct: 992 PKTVSMFHLAGFAGCGKTKPLQSLLSTRPFHS-FRVSTPTTELRNEWKKDMNLPASQAFR 1050
Query: 565 VSTWETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 726
TWE+SL+K +LVIDE+YK+PRG+LDL ++ADP L+ VI+LGDP Q Y S
Sbjct: 1051 FCTWESSLLKQTKILVIDEIYKLPRGYLDLCILADPCLELVIILGDPLQGEYHS 1104
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 77.0 bits (181), Expect = 4e-13
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 7/171 (4%)
Frame = +1
Query: 229 QVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIH 408
+ + T+ +PR+K ++K G T+ TA ++ + +D A SV +I+
Sbjct: 1002 KTRQMTVAQPRSKAYLRDLKRGNIG----TIPTAEAEQLDAY-IDSWAVNGFNRSVHVIY 1056
Query: 409 ITGFPGCGKT---FPVTQ-LLKTKAFKGQ-YRVAVPTTELRSEWKDHMKLPSSEVWRVST 573
G PG GK+ +T+ LLK + Q R+ PT LR+ +K P+ + V T
Sbjct: 1057 FCGLPGTGKSRRCMKMTERLLKENKYLAQTVRIVTPTDNLRNSVARQLKPPTESSYSVQT 1116
Query: 574 WETSLMKSA--PVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
+ET + + + PVL++DE KMP G+L+ L +P +Q VI DP Q ++
Sbjct: 1117 YETPIRQPSLGPVLIVDEYGKMPAGWLETVLFLNPRVQMVIFTADPTQGIF 1167
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 73.7 bits (173), Expect = 4e-12
Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 4/233 (1%)
Frame = +1
Query: 28 LNTIGPDDAPLLSLIYTGDGSIGHWAADDSPLSAPLSPIRGSAKTLNSFAS-TAIRFRDS 204
L +G D + +L ++ G+ GHW+ P + + GS F S A+ ++
Sbjct: 616 LAQVGRLDGTVHTLHWSVQGTQGHWSRA-VPNTPATTGSTGSTTGNGPFVSGNALPYQRF 674
Query: 205 HGNLLPFR-QVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFP 381
G++ Q ++T AK L + ++ E G I + AS P
Sbjct: 675 LGSVRQMGWQSFQFTPSLTFAKRLYNELEVEITGKITKIDKWASCHKNIEMAARNGCVRP 734
Query: 382 PQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQY-RVAVPTTELRSEWKDHMKLPSSEV 558
+V I++ G GCGK+ V L++ G + V P +L EW + + SSE
Sbjct: 735 REV----IYLAGTAGCGKSSGVADLVQRHGNLGYWLSVVSPLNDLNEEWTEKITGLSSEQ 790
Query: 559 WRV-STWETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQT 714
++ T E ++ V+V DE K+P +LDL L P ++ VILLGDP Q+
Sbjct: 791 RKIFKTHEKAMFAQPQVVVFDEAQKLPGHYLDLYLAYHPDVELVILLGDPFQS 843
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 73.7 bits (173), Expect = 4e-12
Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Frame = +1
Query: 259 RAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKT 438
RAK+ S++KN G + D TF + + P QV++ +IH G G GK+
Sbjct: 794 RAKSFGSDVKNLRVGALLKHQSKEWLD-TFGRKTEIE---PRQVALSVIH--GVGGSGKS 847
Query: 439 FPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAP-VLVI 615
+ + ++ + + V +PT ELR +W K+P + V+ T+E +L++ AP V+VI
Sbjct: 848 HAIQEWIRQNP-EEEIVVILPTNELRLDWT--RKIPKAPVYMFKTFEKALLQPAPSVVVI 904
Query: 616 DEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
D+ K+P GF++ +V +P+L +I+ GD Q+ +
Sbjct: 905 DDYTKIPAGFIEAYIVTNPSLHTLIITGDSRQSFH 939
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 65.7 bits (153), Expect = 1e-09
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Frame = +1
Query: 259 RAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPP-QVSVQLIHITGFPGCGK 435
RA LAS++KN G + L D + D R Q++V +IH G G GK
Sbjct: 597 RAHALASDVKNAKIGKL---LTKQPQD--WLKSWDARCSTSELQLNVAVIHGAG--GSGK 649
Query: 436 TFPVTQLLKTKAFKGQYRVAV-PTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAPVLV 612
++ + + L+ K ++ V PT ELR++W K+P R+ T+E ++++ V
Sbjct: 650 SYSIQETLRNKRETLEHTTIVTPTVELRNDWSG--KIPRMAPDRIKTYEKAMLQPGTATV 707
Query: 613 I-DEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
I D+ K+P G+LD V P ++ IL GD QT Y
Sbjct: 708 ILDDYGKLPPGYLDSYAVLHPNVELFILTGDHRQTTY 744
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 65.3 bits (152), Expect = 1e-09
Identities = 43/155 (27%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Frame = +1
Query: 259 RAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKT 438
RA++ S++KN+ G I T + AS +++ + +V+ +IH G G GK+
Sbjct: 688 RARDYGSDVKNKRIGAITKT-QAASWGEYLTGKIESLTE--RKVAACVIHGAG--GSGKS 742
Query: 439 FPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMK-SAPVLVI 615
+ + L+ V +PT ELR +W K+P++E + T+E +L+ + +++
Sbjct: 743 HAIQKALREIGKGSDITVVLPTNELRLDWSK--KVPNTEPYMFKTYEKALIGGTGSIVIF 800
Query: 616 DEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
D+ K+P G+++ + ++ VIL GD Q+VY
Sbjct: 801 DDYSKLPPGYIEALICFYSKIKLVILTGDSRQSVY 835
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 64.1 bits (149), Expect = 3e-09
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 2/167 (1%)
Frame = +1
Query: 226 RQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLI 405
R + Y L RA S++KN G++ L T + L + A + SV LI
Sbjct: 699 RNCYRYKLDAKRATAFMSDVKNNLTGLVLPKLDRDLL--TSWVALAENA----KRSVGLI 752
Query: 406 HITGFPGCGKTFPVTQLLKT-KAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWET 582
I G G GK+ + +LL+ K + + VPT L +WK KLPS + R+ T+E
Sbjct: 753 VIHGAGGAGKSRALQELLRHGKMDINEVNIVVPTINLAVDWK--RKLPSMDPRRIMTFEK 810
Query: 583 SLMKSAPVLVI-DEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
+ + +VI D+ K+P G++D L ++ VIL GD Q+V+
Sbjct: 811 ACEREGKSIVIMDDYGKLPAGYIDAYLAIKFNVELVILTGDQRQSVF 857
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
virus (NMV)
Length = 1643
Score = 64.1 bits (149), Expect = 3e-09
Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Frame = +1
Query: 238 EYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITG 417
E T+ RA + S++KN G + S + F ++L Q +V +IH G
Sbjct: 815 EITMQHKRAGSYDSDIKNNRTGKLLSQMDNKWK-AAFAYKLQQE---DRKVCGTIIH--G 868
Query: 418 FPGCGKTFPVTQLLKT-KAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMK 594
G GK+F + + +++ K + V PT LR++W+ + + ++V++ T+E S+++
Sbjct: 869 CGGSGKSFAIQEWMRSLKEDQSVVTVVTPTVLLRNDWQTKLPILPADVFK--TFEKSVIQ 926
Query: 595 SA-PVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
P+LV D+ K+P G ++ ++ + F+IL GD Q+VY
Sbjct: 927 PCNPILVFDDYTKLPPGLIESVVMHHQNVVFIILTGDNRQSVY 969
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Foxtail mosaic virus
Length = 1335
Score = 63.7 bits (148), Expect = 4e-09
Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Frame = +1
Query: 379 PPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEV 558
P ++ + ++H G G GK++ + + ++ + V +PT ELR++WK KLP+ +
Sbjct: 593 PKEIHLAVLHGAG--GSGKSYALQEFMRNNS-DTPITVILPTNELRADWKK--KLPAHDK 647
Query: 559 WRVSTWETSLM-KSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQ 711
T+E +L+ + ++D+ K+PRG+++ + PAL +IL GDP Q
Sbjct: 648 DTFMTYENALLCPRGDIFIMDDYTKLPRGYIEAFVQNAPALSLLILTGDPNQ 699
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 63.3 bits (147), Expect = 6e-09
Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 1/160 (0%)
Frame = +1
Query: 244 TLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFP 423
T+ RA S++KN G + + + + Q D ++ +IH G
Sbjct: 612 TMLSSRASAYTSDIKNNRTGKLLPAMNMPWKASLAY--VTQHGD--REIPGVVIHGAG-- 665
Query: 424 GCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAP 603
GCGK++ + + L++ + V PT ELR++W + K+ S E + T+E +L++
Sbjct: 666 GCGKSYAIQKWLRSCSDPCAATVVCPTLELRNDWLN--KIGSYEQTNIKTFEKALIQPVN 723
Query: 604 -VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
V++ D+ K+P G+++ + L +IL GDP Q+ Y
Sbjct: 724 NVVIFDDYTKLPPGYIETMVYHHHNLDLIILTGDPMQSAY 763
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 62.9 bits (146), Expect = 8e-09
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Frame = +1
Query: 259 RAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKT 438
RA+ AS++KN G ++ + + + RL + ++ ++ + +IH G G GK+
Sbjct: 595 RARAYASDIKNSRTG--KALHKESQNWKETQTRLTETSE--TRLGLSVIHGAG--GSGKS 648
Query: 439 FPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKS-APVLVI 615
+ +L+ V +PT ELR +W KLP + + T+E + + S APV++
Sbjct: 649 QALQTMLRNHPDL-PVEVVLPTNELRXDWL--RKLPHNPPEQFRTFERAFVSSTAPVVIF 705
Query: 616 DEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
D+ K+P+GFL+ + P L+ IL GDP Q+ +
Sbjct: 706 DDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTH 740
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
mosaic potexvirus (P1AMV)
Length = 1385
Score = 60.1 bits (139), Expect = 5e-08
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Frame = +1
Query: 253 KPRAKNLASNMKNETDG-VIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGC 429
+ RA+ S++KN G + +T T Q ++++ +IH G G
Sbjct: 617 RTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQT-----ELAISVIHGAG--GS 669
Query: 430 GKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKS-APV 606
GK+ + LL+ + V +PT ELR +W KLP + + T+E + + S +PV
Sbjct: 670 GKSQALQTLLR-QDHSLPIEVVLPTNELRLDWLK--KLPHNPPEQFRTFERAFVSSHSPV 726
Query: 607 LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
++ D+ K+P+G+L+ + L+ VIL GDP Q+ +
Sbjct: 727 VIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTH 764
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 59.7 bits (138), Expect = 7e-08
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Frame = +1
Query: 379 PPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEV 558
P Q + +IH G G GK+ + + ++ + +PT ELR++WK KLP+ +
Sbjct: 627 PRQTLISVIHGAG--GSGKSRALQEYMRNNK-EDPIVTILPTNELRADWK--AKLPAHDP 681
Query: 559 WRVSTWETSLM-KSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQT 714
T+E +L+ V+++D+ K+PRG+++ + P L +IL GDP Q+
Sbjct: 682 DMFMTFENALLIPKGNVVIMDDYTKLPRGYIEAYVQNSPMLDLLILTGDPRQS 734
>UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep:
Replicase - Lolium latent virus
Length = 440
Score = 59.7 bits (138), Expect = 7e-08
Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Frame = +1
Query: 490 VAVPTTELRSEWKDHM-KLPSSEVWRVSTWETSLMKSAPVLVI-DEVYKMPRGFLDLALV 663
+ VPT L+ +W++ M + PS + V T+E ++M+SAP +V+ D+ K+P G++DL
Sbjct: 19 IIVPTRVLQQDWRNKMTEFPS---FLVQTYEAAMMESAPQMVVFDDYGKLPHGYIDLFCQ 75
Query: 664 ADPALQFVILLGDPCQTVY 720
P++++VIL GD Q+ Y
Sbjct: 76 FHPSVEYVILTGDARQSTY 94
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 59.3 bits (137), Expect = 1e-07
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Frame = +1
Query: 244 TLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFP 423
TL RA + AS++KN G + A D + + V V + I G
Sbjct: 777 TLDHKRAGSYASDIKNSRTGKL-----LAQKDDKWKAAFAYKMQHEDHVVVGTV-IHGCG 830
Query: 424 GCGKTFPVTQLLKT-KAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSA 600
G GK+ + ++T KA + V PT LR++W + + +E ++ T+E ++++
Sbjct: 831 GSGKSHTLQNWMRTLKADQSDVTVVTPTILLRNDWSTKLPILPAETFK--TFEKAIVQPC 888
Query: 601 -PVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
PV++ D+ K+P G ++ ++ + F+IL GD Q+VY
Sbjct: 889 NPVVIFDDYTKLPPGIIEALVMHHRNVSFIILTGDSRQSVY 929
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 57.6 bits (133), Expect = 3e-07
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 12/175 (6%)
Frame = +1
Query: 238 EYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITG 417
E+ + RAK LA + + GV+QS + A ++ F R + P V++ I G
Sbjct: 1118 EFKIEHARAKILADSFHSGGTGVLQSEIFNAKAN--FAERFKR----PDGTLVEICVICG 1171
Query: 418 FPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSS------EVWRVSTWE 579
G GK+ +L++ + K VA P L E + +++P + E WR+ T+E
Sbjct: 1172 VFGSGKSHGFLELMQRSSGKIVDFVA-PRRALSDEMQKKLEIPKTKRKAGQENWRICTFE 1230
Query: 580 TSLMKSA-----PVLVIDEVYKMPRGFLDLAL-VADPALQFVILLGDPCQTVYSS 726
L + A ++ DE P G+ DL L ++ P + FV LLGDPCQ+ Y +
Sbjct: 1231 KFLDRCAYLIPGQLVCFDEFQLYPPGYFDLCLSLSVPGVHFV-LLGDPCQSNYDN 1284
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 57.2 bits (132), Expect = 4e-07
Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Frame = +1
Query: 259 RAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKT 438
RAK AS++KN G++ + ++ TF + A P V +IH G G GK+
Sbjct: 745 RAKCYASDVKNGRTGLL-TRHQSDEWKETFSTLTEMEA---PSTWVSVIHGAG--GSGKS 798
Query: 439 FPVTQLLKT-KAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAP-VLV 612
+ + +++ K+ + + + +PT ELR +W+ K+P + T+E +L++ + V
Sbjct: 799 QALQEYMRSLKSDQKEITIILPTNELRIDWEG--KVPHMNTYAFKTFERALIEPVEDICV 856
Query: 613 IDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
D+ K+P G+++ + + +IL GD Q+VY
Sbjct: 857 FDDYGKLPPGYIEAFCMLHVNITCLILTGDSRQSVY 892
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 56.8 bits (131), Expect = 5e-07
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Frame = +1
Query: 226 RQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLI 405
R ++ Y + RA S++KN G++ L D A+ + V L+
Sbjct: 775 RGIYNYRINNKRATAYMSDVKNNLTGLVLPKL-----DRDLLSSWVALAERTTR-DVGLL 828
Query: 406 HITGFPGCGKTFPVTQLLKTKA-FKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWET 582
I G G GK+ + +LL+ + VPT L ++WK KLP+ + RV T+E
Sbjct: 829 VIHGAGGAGKSRALQELLRNSPELLEAVNIVVPTINLANDWKK--KLPAMDPRRVMTFEK 886
Query: 583 SLMKSAP-VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
+ + V + D+ K+P GF+D L ++ IL GD Q+ +
Sbjct: 887 ACERECKSVTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQSTH 933
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 56.4 bits (130), Expect = 7e-07
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +1
Query: 490 VAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAPVLVI-DEVYKMPRGFLDLALVA 666
V PT ELR +W D KLP SE V T+E +LM A VI D+ K+P GF++ +
Sbjct: 798 VVCPTNELRRDWID--KLPLSEPGSVLTFERALMNPAKGTVIFDDYTKLPAGFIEAYSIC 855
Query: 667 DPALQFVILLGDPCQ 711
P ++ VIL GD Q
Sbjct: 856 QPNVELVILTGDAKQ 870
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 55.6 bits (128), Expect = 1e-06
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 3/168 (1%)
Frame = +1
Query: 226 RQVHEYTLCKPRAKNLASNMKNETDGVIQSTL-RTASSDPTFFHRLDQRADFPPQVSVQL 402
R ++ + + RA S++KN G++ L R S R +V+V
Sbjct: 858 RGIYTHKIDNRRATAYMSDVKNNLTGLVLPKLDRDLLSSWVALAETTTR-----EVAVLA 912
Query: 403 IHITGFPGCGKTFPVTQLLKTKA-FKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWE 579
IH G G GK+ + +LL++ + VPT L ++WK KLP + RV T++
Sbjct: 913 IHGAG--GAGKSRALQELLRSSPELADSINIVVPTINLANDWK--AKLPQMDPRRVMTFQ 968
Query: 580 TSLMKSAP-VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
+ + V + D+ K+P GF+D L ++ IL GD Q+ +
Sbjct: 969 KACERECKSVTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQSTH 1016
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 54.0 bits (124), Expect = 4e-06
Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Frame = +1
Query: 385 QVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWR 564
++++ +IH G G GK+ + L+K + V +PT ELR +W KLP + +
Sbjct: 814 ELAISVIHGAG--GSGKSQALQTLIKDNP-ELDITVVLPTNELRLDWL--RKLPKAPQEK 868
Query: 565 VSTWETSLM-KSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
T+E +L+ P+++ D+ K+P G+++ + +Q +IL GD Q+V+
Sbjct: 869 FKTFEKALLAPPTPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVH 921
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 53.6 bits (123), Expect = 5e-06
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Frame = +1
Query: 409 ITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSL 588
I G G GK+ + Q + + +G V +PT EL +W + K P++ T+E +L
Sbjct: 937 IHGAGGSGKSHLLQQWVSSTE-RGNVVVILPTIELLRDWLN--KCPTTPKDSFKTFEKAL 993
Query: 589 MK-SAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
++ SAPV+++D+ K+P G+++ + + ++L GDP Q+ Y
Sbjct: 994 VQNSAPVVIMDDYSKLPPGYIEAYVALKGQCKLLVLTGDPRQSHY 1038
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 53.2 bits (122), Expect = 6e-06
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Frame = +1
Query: 409 ITGFPGCGKTFPVTQLLKTKAFKGQY-RVAVPTTELRSEWKDHM-KLPSSEVWRVSTWET 582
I G G GK+ + L+T V VPT ELR++W + + KLP + T+E
Sbjct: 709 IHGCGGSGKSQALQNFLRTLGDTNDCCTVVVPTVELRNDWVNKLCKLPMEHI---KTFEK 765
Query: 583 SLMKSA-PVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
++++ PV++ D+ K+P G+++ L + IL GD Q+VY
Sbjct: 766 AMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY 812
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White
clover mosaic virus (strain O) (WCMV)
Length = 1294
Score = 52.8 bits (121), Expect = 8e-06
Identities = 42/167 (25%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Frame = +1
Query: 226 RQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLI 405
R+ +L RA+ S++KN G + L+ S D L + + +V + +I
Sbjct: 513 REPTTVSLDNHRARAYGSDVKNLRIGAL---LKKQSKDWLASFAL-KTENIEREVLMSVI 568
Query: 406 HITGFPGCGKTFPVTQLLKTKAFKGQY-RVAVPTTELRSEWKDHMKLPSSEVWRVSTWET 582
H G G GK+ + +++ + ++ + +PTT+LR++W + K+P+ E T+E
Sbjct: 569 HGAG--GSGKSHAIQTWMRSLNRRDRHVTIILPTTDLRNDWTN--KVPNLEQANFKTFEK 624
Query: 583 SLMK-SAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
+L + ++V D+ K+P+G+++ L + + IL GD Q+ +
Sbjct: 625 ALCQPCGKIIVFDDYSKLPQGYIEAFLAINQNVILAILTGDSKQSFH 671
>UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic
virus|Rep: Replicase - White ash mosaic virus
Length = 954
Score = 52.4 bits (120), Expect = 1e-05
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Frame = +1
Query: 391 SVQLIHITGFPGCGKTFPVTQLLKTKAFKGQY-RVAVPTTELRSEWKDHMKLPSSEVWRV 567
+V+L+ I G GK+ + +++ ++ + VPT L ++W+ K+P +
Sbjct: 404 TVKLLVIHGAGXAGKSRCLQNMIRDVQQPDKFFTIVVPTVALMTDWRS--KIPEMSCKSI 461
Query: 568 STWETSLMK-SAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
T+E + +K S ++ D+ KMP GF+D L P + IL GD Q+ Y
Sbjct: 462 LTYERACLKPSTDTVIFDDYGKMPPGFIDAYLSIKPNVANAILTGDQRQSTY 513
Score = 50.8 bits (116), Expect = 3e-05
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 484 YRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMK-SAPVLVIDEVYKMPRGFLDLAL 660
+ + VPT L ++W+ K+P + T+E + +K S ++ D+ KMP GF+D L
Sbjct: 74 FTIVVPTVALMADWRS--KIPEMSCKSILTYERACLKPSTDTVIFDDYGKMPPGFIDAYL 131
Query: 661 VADPALQFVILLGDPCQTVY 720
P + IL GD Q+ Y
Sbjct: 132 SIKPNVSNAILTGDQRQSTY 151
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Strawberry mild yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 52.4 bits (120), Expect = 1e-05
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Frame = +1
Query: 409 ITGFPGCGKTFPVTQLLKT-KAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETS 585
I G G GK+ + +++ K + V +PT ELR++W + K+P + TWE
Sbjct: 603 IHGAGGSGKSQRLQDWMRSLKKNSRECTVILPTAELRTDWVN--KVPKQSLDTFKTWEKG 660
Query: 586 LMKSA-PVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYS 723
L++ V+++D+ K+P G+ + P ++ +IL GD Q+V++
Sbjct: 661 LVQPPNRVVILDDYGKLPAGYPEALCANYPNIELLILTGDSRQSVHN 707
>UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replicase -
Phlox virus S
Length = 1990
Score = 48.4 bits (110), Expect = 2e-04
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Frame = +1
Query: 208 GNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQ 387
G+LLP Y + RAK LA + GV+ S+L S+ +D + +
Sbjct: 1130 GSLLP------YAPDEARAKVLADCLLAGNTGVLNSSLFNNCSN--LMGSVDLNVEHENE 1181
Query: 388 VSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPS------ 549
V+ I G GCGK+ + KG + ++ P L E+K +
Sbjct: 1182 VAC----IFGTFGCGKSTVFKKFFNLNPGKGVFYIS-PRRALADEFKGKVMAKKVGRFDK 1236
Query: 550 --SEVWRVSTWET-----SLMKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPC 708
+ W + T+E L+K +++DE+ P G+LDL ++ P + I+ GDPC
Sbjct: 1237 LRQKNWSICTFEIFLKKRHLVKPGMAVILDELQLYPPGYLDLVMLLCPKGVYFIVGGDPC 1296
Query: 709 QTVYSS 726
Q+ Y +
Sbjct: 1297 QSDYDN 1302
>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
Carlavirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
(strain Russian) (PVM)
Length = 1968
Score = 48.4 bits (110), Expect = 2e-04
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Frame = +1
Query: 259 RAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKT 438
RA LA +M GV+ S L F ++ + R F VS+ L I G G GK+
Sbjct: 1122 RAGMLADSMYQGATGVLGSAL--------FNNKRNMREKFVRNVSLSLHAIVGTFGSGKS 1173
Query: 439 FPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKL--------PSSEVWRVSTWETSL-- 588
LLK A K V+ P L ++K + + E WRV+T ET L
Sbjct: 1174 TLFKNLLKYGAGKSLDFVS-PRRALAEDFKRTVGMNERGGRAKAGQENWRVTTLETFLAR 1232
Query: 589 ---MKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 726
+ V+++DE+ P G+ DL + + L+GDP Q+ Y S
Sbjct: 1233 VEFLTEGQVVILDEMQLYPPGYFDLVVSMLKVDVRLFLVGDPAQSDYDS 1281
>UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep:
Replicase - Daphne virus S
Length = 2004
Score = 47.6 bits (108), Expect = 3e-04
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 22/184 (11%)
Frame = +1
Query: 241 YTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIH-ITG 417
Y + RAK L+ ++ T GVI S L D L Q + PP+ + ++ + G
Sbjct: 1142 YKATELRAKVLSRSLFEGTTGVISSNLFNGRLD------LMQHGETPPKEKSRDVYCLMG 1195
Query: 418 FPGCGKTFPVTQLLKTK-----AFKGQYRVAVPTTELR-----------SEWKDHMKLPS 549
G GK+ + K + +V E R E K
Sbjct: 1196 TFGAGKSTHLANFFKMNKGRMITYVSPRKVLAEDFEKRIGLERKEKGQGREAAGQRKKLG 1255
Query: 550 SEVWRVSTWETSLMKSAPV-----LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQT 714
E WRV T+E +L++ + L++DE+ P G+LDL P + + GDPCQ+
Sbjct: 1256 QEHWRVKTFEQALLEHTKIREGSCLILDEIQLYPPGYLDLMCYLVPDRTIIAVAGDPCQS 1315
Query: 715 VYSS 726
Y +
Sbjct: 1316 DYDN 1319
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 46.8 bits (106), Expect = 5e-04
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Frame = +1
Query: 397 QLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAV-PTTELRSEWKDHMKLPSS------- 552
+L + G G GK+F +K +G++ V P L + K+ +++ S
Sbjct: 1350 ELTVVLGTFGAGKSFLYKSFMKRS--EGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAG 1407
Query: 553 ----EVWRVSTWETSLMKSAPV-----LVIDEVYKMPRGFLDLALVADPALQFVILLGDP 705
E W V T+E L K A + ++ DEV P G++DL L+ + F+ L GDP
Sbjct: 1408 RSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDP 1467
Query: 706 CQTVYSS 726
CQ+ Y S
Sbjct: 1468 CQSTYDS 1474
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 46.4 bits (105), Expect = 7e-04
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Frame = +1
Query: 559 WRVSTWETSLM---KSAP--VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYS 723
W V T+E L KS P V++IDEV P G+LDLAL + V ++GDPCQ+ Y
Sbjct: 1245 WNVFTFEVFLKMAAKSKPGQVVIIDEVQLYPPGYLDLALTLMRSDVNVFVVGDPCQSDYD 1304
Query: 724 S 726
S
Sbjct: 1305 S 1305
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 46.4 bits (105), Expect = 7e-04
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Frame = +1
Query: 388 VSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAV--PTTELRSEWKDHMKLPSSEVW 561
+ V++ I GF G GK+ + L++T+ FKG V V P L +W + +
Sbjct: 1051 MKVKIYGIFGFAGSGKSHAIQNLIQTE-FKGSQGVMVICPRRFLAKDWSEK----GVDEK 1105
Query: 562 RVSTWETSL---MKSAPVLVIDEVYKMPRGFLDLALV---ADPALQ--FVILLGDPCQTV 717
+ T+E++L +K + ++DE+ +P+GF DL ++ + L+ ++ +GDP Q
Sbjct: 1106 DIKTFESALKSDVKGKRLFILDEISLLPKGFTDLLMLKMHMEGILKKSTIVCIGDPLQAG 1165
Query: 718 Y 720
Y
Sbjct: 1166 Y 1166
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 46.0 bits (104), Expect = 0.001
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 11/189 (5%)
Frame = +1
Query: 193 FRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRA 372
F + N++PF T P AK LAS++ + GVI S + + D + +
Sbjct: 1168 FLRGNANVIPF------TPSLPAAKKLASSLLSGQTGVINSKIISGQYD---WLADSNKL 1218
Query: 373 DFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSS 552
F + ++ I G G GK+ V +LL+ Q V P L+ ++ + L +
Sbjct: 1219 CFDER---KVGTIVGTFGSGKSHNVIELLRHN-LGYQNLVISPRRSLKEQFISMLDLVKA 1274
Query: 553 E------VWRVSTWETSLMKSAPV----LVIDEVYKMPRGFLDL-ALVADPALQFVILLG 699
V T+E +L KS + + +DEV +P G+LDL L+A P ++++G
Sbjct: 1275 RSKGKKASTEVVTFEVALKKSGLLKRVRIFLDEVQLLPPGYLDLICLIAGPTAS-ILVMG 1333
Query: 700 DPCQTVYSS 726
DP Q+ Y S
Sbjct: 1334 DPAQSSYDS 1342
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 46.0 bits (104), Expect = 0.001
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Frame = +1
Query: 409 ITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPS-SEVWR------V 567
I G GCGK+ +L+ +K + + P L SE K ++ S ++V R V
Sbjct: 1285 ILGVYGCGKSTLFKKLV-SKNPRAYIHIVSPRKALASEMKLALEESSDAQVRRRGHNTTV 1343
Query: 568 STWETSLMKS------APVLVIDEVYKMPRGFLDLAL-VADPALQFVILLGDPCQTVYSS 726
ST+E + ++ L+IDE+ P G+LDL + + +P V L+GDPCQ+ Y S
Sbjct: 1344 STFERFVQRALQSKFRCDALLIDEIQLYPPGYLDLVVNLVNPKEGTVFLIGDPCQSDYDS 1403
Query: 727 V 729
+
Sbjct: 1404 L 1404
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 45.6 bits (103), Expect = 0.001
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Frame = +1
Query: 571 TWETSLMKSAPV-----LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 726
T+ET++MK+ + L+IDE+ P G+LDL L+ P+ VI GDP Q+ Y S
Sbjct: 1192 TFETAIMKAGQIGDDSILIIDEIQLYPPGYLDLILLLIPSSCMVICAGDPVQSDYDS 1248
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
virus A|Rep: RNA-dependent RNA polymerase - Grapevine
virus A
Length = 1707
Score = 44.4 bits (100), Expect = 0.003
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Frame = +1
Query: 415 GFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMK 594
GF G GK+ +LK + + + V P L+ +W + S+ +V T+E + M
Sbjct: 927 GFAGSGKSHWCQTILKHCSVE-KALVISPRKVLKDDWTSKI----SKRHKVVTFEVAFMD 981
Query: 595 S--APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 726
+VIDE+ +P G++DL ++A + ++LLGDP Q+ Y S
Sbjct: 982 DYGCKDVVIDEIGLLPPGYIDL-VIAVHRPRTLVLLGDPLQSTYHS 1026
>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
common latent virus|Rep: RNA-dependent RNA polymerase -
Narcissus common latent virus
Length = 1966
Score = 43.6 bits (98), Expect = 0.005
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 13/178 (7%)
Frame = +1
Query: 232 VHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHI 411
V EY RA+ LA ++ + GV+QS L F ++ + R F ++ + I
Sbjct: 1111 VIEYMPQIERAQVLADSLFRASTGVLQSAL--------FNNKQNLRGRFRQVHAIPVCVI 1162
Query: 412 TGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSS--------EVWRV 567
G G GK+ +LL+ + K + P L ++ + L E WRV
Sbjct: 1163 AGTFGSGKSTLFKRLLEHGSGK-IFDFVSPRRALADDFMAQVGLSKGRKNIKVGQENWRV 1221
Query: 568 STWETSL-----MKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 726
T+E + + VL+ DE+ P G+ DL L+GDPCQ+ Y S
Sbjct: 1222 HTFERFIDRVPYLNEGQVLIFDEMQLYPPGYFDLIFHLAKVDVHCFLVGDPCQSDYDS 1279
>UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
symptomless virus|Rep: RNA-dependent RNA polymerase -
Narcissus symptomless virus
Length = 1871
Score = 43.2 bits (97), Expect = 0.007
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Frame = +1
Query: 409 ITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWR---VSTWE 579
I G G GK+ +++K ++ K V+ P L E++ ++ ++ V T+E
Sbjct: 1077 ILGTFGSGKSSVFVKVIKNESEKSICYVS-PRRSLADEFEKRVREDGKRKYKAFVVFTFE 1135
Query: 580 TSLMKSAPV-----LVIDEVYKMPRGFLDLALVADPALQFVI-LLGDPCQTVYSS 726
+ K + ++IDE+ P G+LDL L+ L+ + GDPCQ+ Y S
Sbjct: 1136 QFIKKMTKLRKGQTVIIDEIQLYPPGYLDLVLIITQHLELTFYITGDPCQSDYDS 1190
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 42.7 bits (96), Expect = 0.009
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 490 VAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMK---SAPVLVIDEVYKMPRGFLDLAL 660
V P EL S+ + M L ++ T+ET++ S +++IDE+ P G+LD L
Sbjct: 999 VISPRKELASDLQKKMDLSRKTSIKICTFETAMSFMPWSGNLVIIDELQLCPPGYLDFLL 1058
Query: 661 VADPALQFVILLGDPCQTVYSS 726
I GDPCQ Y +
Sbjct: 1059 AISNKETKFIATGDPCQASYDN 1080
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 39.5 bits (88), Expect = 0.082
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 589 MKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 726
+K +VIDE+ P G++DL ++ +I+ GDPCQ+ Y S
Sbjct: 1449 IKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDS 1494
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 37.1 bits (82), Expect = 0.44
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Frame = +1
Query: 391 SVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHM-------KLPS 549
S+ + GF G GK+F +T+ L + P ++ + + + KL
Sbjct: 810 SLPVYPFIGFAGSGKSFGLTEKLINGDCSQNFMFTAPRKKIIGQIHERIDSRQYDDKLKI 869
Query: 550 SEVWRVSTWETSLMK--SAPVLVIDEVYKMPRGFLDLALV 663
S ST+E +L+ + P++++DE P GF+DL L+
Sbjct: 870 SRKKNFSTFENTLLSLVNKPLVIMDECSLNPPGFIDLVLI 909
>UniRef50_Q8RBN3 Cluster: Folylpolyglutamate synthase; n=5;
Clostridia|Rep: Folylpolyglutamate synthase -
Thermoanaerobacter tengcongensis
Length = 431
Score = 35.5 bits (78), Expect = 1.3
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Frame = +1
Query: 382 PQVSVQLIHITGFPGCGKTFP-VTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEV 558
P+ ++++IH+ G G G T ++ +LK + Y+VA+ T+ E+++ MK+ +
Sbjct: 38 PEKNLKIIHVAGTNGKGSTSSFISSILK----EAGYKVALYTSPYLEEFEERMKINGENI 93
Query: 559 WRVS-TWETSLMKSAPVLVIDEVYKMPRGFLDLALVA-----DPALQFVIL 693
R + +K ++ E Y P F + +A D + FV+L
Sbjct: 94 SREKLVYYVEYIKPIIARMVQEGYNHPTEFEVITAIAFKYFSDEEVDFVVL 144
>UniRef50_A3ETY4 Cluster: ATP-dependent exonuclease V, alpha
subunit; n=1; Leptospirillum sp. Group II UBA|Rep:
ATP-dependent exonuclease V, alpha subunit -
Leptospirillum sp. Group II UBA
Length = 575
Score = 35.5 bits (78), Expect = 1.3
Identities = 49/154 (31%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Frame = +1
Query: 292 ETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKT-K 468
E D Q LR AS RL + A F P +TG PG GKT+ ++LK K
Sbjct: 143 EPDARDQEILRLASGGVEDRRRLLEGALFRP-----FFLLTGGPGTGKTYTSAEILKVWK 197
Query: 469 AFKGQYR--VAVPTTELRSEWKDHMKLPSSEVWR------VSTWETSLMKSAPVLVIDEV 624
+ + VA PT + +++ + LP +V +S S + P LV D V
Sbjct: 198 ILRPEAHLVVATPTGKAARRFREALSLPEVDVLTLHRLLGISPGGASPGEDRP-LVQDLV 256
Query: 625 YKMPRGFLDLALVAD--PALQ---FVILLGDPCQ 711
+DL+L+A AL VIL+GDP Q
Sbjct: 257 LVDECSMVDLSLMARLFRALSPETSVILVGDPDQ 290
>UniRef50_A6FPW0 Cluster: Putative uncharacterized protein; n=1;
Roseobacter sp. AzwK-3b|Rep: Putative uncharacterized
protein - Roseobacter sp. AzwK-3b
Length = 415
Score = 35.1 bits (77), Expect = 1.8
Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 6/131 (4%)
Frame = +1
Query: 307 IQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQY 486
++S L TA P +HR R + VQL+ +TG PG GKT V L GQ
Sbjct: 14 LESALETADI-PGPYHRWGSRLLSHLRKPVQLV-VTGLPGSGKTALVNMLAGRTVLGGQD 71
Query: 487 RVAV------PTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAPVLVIDEVYKMPRGFL 648
A+ P E +D S+ + R W + + L + + + +
Sbjct: 72 EAAISEVAYGPDARAVFEMEDGSVAVSAGLVRDVAWPADVRLTRQELPDPRLER--QSLV 129
Query: 649 DLALVADPALQ 681
++ L ADPA Q
Sbjct: 130 EIGLPADPAQQ 140
>UniRef50_A4BXQ6 Cluster: Putative uncharacterized protein; n=1;
Polaribacter irgensii 23-P|Rep: Putative uncharacterized
protein - Polaribacter irgensii 23-P
Length = 255
Score = 34.7 bits (76), Expect = 2.3
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -1
Query: 522 FGTQLGGGNS-DSVLAFKCFGFEKLSDRESFPTTRKSSNVNELHGNLWGEVGSLIKAMEK 346
FG G N+ S LAF + L RE +T++ + + NL+ + S +K +E+
Sbjct: 52 FGDMFGAANALFSGLAFAGIIYTILLQREDLKSTKEEFKIQQFETNLYNLINSHLKIVEQ 111
Query: 345 SGV**CRSEGGLYNSISLIFHV 280
GV + + G+Y +F +
Sbjct: 112 LGV---KGDNGIYIKGREVFRI 130
>UniRef50_Q5EUJ4 Cluster: Terminal acidic SANT 1; n=7; Poaceae|Rep:
Terminal acidic SANT 1 - Zea mays (Maize)
Length = 422
Score = 34.7 bits (76), Expect = 2.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 37 IGPDDAPLLSLIYTGDGSIGHWAADDSPLSAPLSPIRGSAKT 162
IGP L++ GDG++ W A D + A L + G AKT
Sbjct: 174 IGPSRLEALAMRIVGDGAVDTWGAADEAMRANLRILAGEAKT 215
>UniRef50_UPI000038D0BD Cluster: COG0507: ATP-dependent exoDNAse
(exonuclease V), alpha subunit - helicase superfamily I
member; n=1; Nostoc punctiforme PCC 73102|Rep: COG0507:
ATP-dependent exoDNAse (exonuclease V), alpha subunit -
helicase superfamily I member - Nostoc punctiforme PCC
73102
Length = 2142
Score = 34.3 bits (75), Expect = 3.1
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Frame = +1
Query: 364 QRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVA--VPTTELRSEWKDHM 537
Q + S Q I G G GKTF + + LK AF Y + P++ + +
Sbjct: 403 QAVELAATTSDQFIAWQGVAGAGKTFALKE-LKAIAFNAGYTIKGFAPSSSAAKVLSEEL 461
Query: 538 KLPSSEVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLALVADPALQF-VILLGDPCQ 711
++ S + R+ E ++ + V+DE + L LQ VIL+GD Q
Sbjct: 462 EIQSETIARLLVTEPKEIEPNQIWVVDEAGLLSAKDAHALLQRATLLQARVILVGDTRQ 520
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 34.3 bits (75), Expect = 3.1
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +1
Query: 565 VSTWETSLMKSAPV-----LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSV 729
V T+ET L++S V + DE+ P G+LD + P LGDP Q+ Y S+
Sbjct: 1179 VRTFETFLIQSTRVGGNDLVFFDEIQLFPPGYLDYTSMLLPTTTQFFCLGDPLQSDYDSM 1238
>UniRef50_Q1ING2 Cluster: O-antigen polymerase precursor; n=1;
Acidobacteria bacterium Ellin345|Rep: O-antigen
polymerase precursor - Acidobacteria bacterium (strain
Ellin345)
Length = 409
Score = 34.3 bits (75), Expect = 3.1
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -1
Query: 594 FHERGFPG*DSPNFAGREFHVVFPFGTQLGGGNSDSVLAFKCFGFEKL 451
F+ FP + FAG +H VF LG S V+ F CFGF++L
Sbjct: 142 FYPASFP---ATEFAGAAWHGVFSHKNLLGRTMSLGVVTFLCFGFKRL 186
>UniRef50_Q4QB05 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 285
Score = 33.9 bits (74), Expect = 4.1
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +1
Query: 379 PPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEV 558
PP V+ +LI +TG PGCGK+ Q AF G A+P+ +R + +LP S+V
Sbjct: 67 PPLVTPRLIILTGPPGCGKS---VQASHVAAFLGGVHCALPSL-VRDAFSGG-RLPGSKV 121
>UniRef50_A4R6U0 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 301
Score = 33.9 bits (74), Expect = 4.1
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = +3
Query: 339 PHFFPSP*SKSRLPP--TSFRAAHSHYW--ISWLWENFPCHSASQNQSI*RPVQSRCSHH 506
PH P P S S LPP T A S W +SW W + ++ + Q+ + + H
Sbjct: 44 PH--PMPASSSTLPPPQTPSSPASSSSWNPLSWRWSSTASQTSPEPQTPRPAPRPQLDEH 101
Query: 507 RVAFRMERPHETPFQ--RSLASLNLGNLSHEIST 602
RV + R +P Q S A ++HEI T
Sbjct: 102 RVVSSIPRSSASPSQPPGSAAPPPSRPVNHEIET 135
>UniRef50_A3T1S5 Cluster: ABC phosphate/phosphonate transport system
ATPase; n=3; Rhodobacteraceae|Rep: ABC
phosphate/phosphonate transport system ATPase -
Sulfitobacter sp. NAS-14.1
Length = 260
Score = 33.5 bits (73), Expect = 5.4
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 1 RVSYR--HGEHLNTIGPDDAPLLSLIYTGDGSIGHWAADDSPLSAPLSPIR 147
RVS+R GE + +GP A +L+ DG + W+ S L APL P R
Sbjct: 24 RVSFRVSAGESVALLGPSGAGKTTLLALLDGRLQGWSGRVSVLGAPLDPDR 74
>UniRef50_Q54HS1 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 815
Score = 33.5 bits (73), Expect = 5.4
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 199 DSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSD 339
+++GN P +H + +PR +L +N+ +E D V+ S+ + SD
Sbjct: 119 NNYGNNTPVNYIHNNSTPRPRHSSLRTNLSDEEDSVLYSSDDSEESD 165
>UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis
virus|Rep: Replicase - Coleus vein necrosis virus
Length = 1977
Score = 33.1 bits (72), Expect = 7.2
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Frame = +1
Query: 409 ITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHM---KLPSSEVWRVSTWE 579
ITG GCGK+ + + ++ Y V P L + D + ++ + V T+E
Sbjct: 1177 ITGVFGCGKSTLMKRSFESGLGSKCYFVT-PRRSLADIFSDELTSGRIKTKTTVVVQTYE 1235
Query: 580 TSL-----MKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVY 720
L ++ V++ DE+ P G+ DL + LGD CQ+ Y
Sbjct: 1236 KFLRMLESVEPRDVVIFDEMQLFPHGYFDLTFSIMSQEVPTVCLGDLCQSDY 1287
>UniRef50_Q52T94 Cluster: Putative uncharacterized protein; n=1;
Vibrio cholerae non-O1/non-O139|Rep: Putative
uncharacterized protein - Vibrio cholerae
non-O1/non-O139
Length = 320
Score = 33.1 bits (72), Expect = 7.2
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 409 ITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSL 588
ITG GCGKT V Q+L + Q +TE + + + VW T+
Sbjct: 69 ITGPTGCGKTSAVEQVLARLNYPAQSYTCGGSTEYMDLVGQYTLVNGNTVWMDGVL-TTA 127
Query: 589 MKSAPVLVIDEV 624
M+ VL+++E+
Sbjct: 128 MREGHVLILNEI 139
>UniRef50_A7RQA9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 546
Score = 33.1 bits (72), Expect = 7.2
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +1
Query: 301 GVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKG 480
GV+QS L + D T H + R + + H+ PG GK+ P LL + F+
Sbjct: 360 GVLQSPLDNIADDQTVIHGTESRKESGTSKTGSTEHMAFVPGSGKSKPKKNLL-SPGFES 418
Query: 481 QYR-VAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKS 597
R +++P + S K ++ ++E+W+ ++ L +S
Sbjct: 419 LARYLSLPENPI-STRKTGFEV-TNELWQQQPVQSGLAES 456
>UniRef50_Q4P5W5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1712
Score = 33.1 bits (72), Expect = 7.2
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -2
Query: 611 TKTGADFMREVSQVETRQT--SLEGSFMWS-FHSERNSVVGTATLY 483
TK GAD E + T ++ GS +WS FH++R+S TAT +
Sbjct: 1432 TKVGADLEDEAPSPNLQDTPDTMAGSEIWSAFHADRSSTASTATTW 1477
>UniRef50_UPI00015B6117 Cluster: PREDICTED: similar to CG14749-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
CG14749-PA - Nasonia vitripennis
Length = 549
Score = 32.7 bits (71), Expect = 9.5
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -3
Query: 433 SHNQEIQ*CE*AARKLVGGSRLFDQGDGKKWGLMMPFG 320
SH+Q+I+ C A+ L+ ++ DQGD KW L PFG
Sbjct: 416 SHDQQIE-CY--AKNLLA-QKILDQGDTSKWDLAFPFG 449
>UniRef50_Q9IF44 Cluster: RNA-dependent RNA polymerase; n=15;
Benyvirus|Rep: RNA-dependent RNA polymerase - Beet
soil-borne mosaic virus (BSBMV)
Length = 2117
Score = 32.7 bits (71), Expect = 9.5
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +1
Query: 385 QVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWR 564
+VSV+L +I G PG GK+F L+++ A + V P +LRS++++ W
Sbjct: 934 EVSVRLEYIKGGPGTGKSF----LIRSLADPIRDLVVAPFIKLRSDYQNQRVGDDVVSWD 989
Query: 565 VSTWETSL-MKSAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQT 714
T +L + V+ +DE L + + A + L+GD QT
Sbjct: 990 FHTPHKALDITGKQVIFVDEFTAYDWRLLAVLAYRNHA-HTIYLVGDEQQT 1039
>UniRef50_Q9NX53 Cluster: CDNA FLJ20433 fis, clone KAT03767; n=3;
Homo sapiens|Rep: CDNA FLJ20433 fis, clone KAT03767 -
Homo sapiens (Human)
Length = 252
Score = 32.7 bits (71), Expect = 9.5
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 296 LMELYNPPSERHHQTPLFSIALIKEPTSPHKFPCSSFTLLDFLV 427
L+E PP RH TP S+AL TSPH F C++ + ++V
Sbjct: 155 LLEQTQPPQNRH-STPWNSLALPGMATSPHPF-CAALGICPYVV 196
>UniRef50_Q751M7 Cluster: AGL330Wp; n=2; Saccharomycetaceae|Rep:
AGL330Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 1011
Score = 32.7 bits (71), Expect = 9.5
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -2
Query: 668 SATRARSRKPRGILYTSSITKTGADFMREVSQVETRQTSLEGSFMWSFHSERNSVVG 498
SAT RS+K RGI+YT+ + + REV++V + + E M + + N +VG
Sbjct: 226 SATLLRSKKKRGIVYTTP-DEVYPEHEREVNKVSSDEVIPEDLLMVADEWDYNKIVG 281
>UniRef50_A6UQ83 Cluster: SCP-like extracellular precursor; n=1;
Methanococcus vannielii SB|Rep: SCP-like extracellular
precursor - Methanococcus vannielii SB
Length = 355
Score = 32.7 bits (71), Expect = 9.5
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = +1
Query: 121 LSAPLSPIRGSAKTLNSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLA 276
LSA LSPI G N+ A F ++H NLL RQV + L KN+A
Sbjct: 21 LSAELSPI-GCENIFNNLACQ--NFNENHNNLLNNRQVTNFQLTSILNKNIA 69
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 814,334,494
Number of Sequences: 1657284
Number of extensions: 17770287
Number of successful extensions: 50816
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 48633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50752
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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