Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5n10
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    28   1.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.1  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    27   3.6  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    26   4.8  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    26   4.8  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   4.8  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     26   6.3  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   6.3  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    26   6.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   8.4  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   8.4  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   8.4  

>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 599  ADFMREVSQVETRQTSLEGSFMWSFHSE 516
            AD++ EV ++  R  +LE   +W  HSE
Sbjct: 974  ADYVNEVKRIIQRNANLEFEAIWKGHSE 1001


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 481 QYRVAVPTTELRSEWKDHMKLPSSEVWRVS 570
           Q + A    E   EW DH   PS + WR+S
Sbjct: 40  QNKNASSVLEYSGEWADHDFFPSPDNWRMS 69


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 253 KPRAKNLASNMKN-ETDGVIQSTLRTASSDPTF 348
           KP  KN   N K+ E DGV +     ++SDP F
Sbjct: 27  KPSKKNGTKNGKDKEVDGVTKDLSELSTSDPIF 59


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 286 KNETDGVIQSTLRTASSDPTFFHRLDQRADFP 381
           KNET  + +S +  AS DP    R D+    P
Sbjct: 556 KNETFDIYKSVMNEASLDPLNMSRKDRELSLP 587


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -2

Query: 644 KPRGILYTSSITKTG--ADFMREVSQVETRQTSLEGSFMWSFHSERNSVVGT 495
           K   +L + S  KT   AD   E +    + TS   +  W  HSE N  +GT
Sbjct: 308 KAPSVLLSGSYDKTAKIADLRLEEAPSSFQVTSDVENVAWDQHSENNFFIGT 359


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 397 QLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELR 516
           QL+ I+G  GCGK+  +   L   + K    V +  TE R
Sbjct: 648 QLLIISGDTGCGKSTQIPAFLLENSTKNGKAVKIYVTEPR 687


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 385 QVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTT 507
           +  +  +   GFP  GK+  +TQL  T++    Y     TT
Sbjct: 60  RTGIGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTT 100


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
 Frame = +2

Query: 191  GLETLTAISYHFDKFMSTRSVSLEQKIWPQT*KMRLMELYNPPSERHHQTPLFS------ 352
            G++ +TA++ HF+ +  T++V  + K       + L  L+N    R H T + S      
Sbjct: 1638 GIDHVTAVASHFNVWPDTQTVMTDAKSTTLASLLLLASLHN---RRIHITNVSSKDDLNL 1694

Query: 353  IALIKEPTSPHKFPCSSFTL 412
            I L K+ + P  F  S ++L
Sbjct: 1695 IVLAKQRSLPVTFDVSVYSL 1714


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 221 HFDKFMSTRSVSLEQKIWPQT*KMRLMELYNPPSERHHQTPLFSI 355
           H+++F +           P T K+   ELY P S  + Q P FS+
Sbjct: 166 HYEQFANNDVTESAVDDHPATRKLSRDELYLPISPNNAQEPKFSV 210


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 493 AVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMK 594
           A+  ++   EW++H   PS E WR   +  ++ K
Sbjct: 40  ALDPSDYWGEWENHEFFPSPEHWRFPIYTIAIDK 73


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 710 WHGSPRRMTNWRAGSATRARSRKPR 636
           W G  RR +NW+ G   +  S  P+
Sbjct: 77  WKGLFRRQSNWKDGRCKKVESMLPQ 101


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 403 IHITGFPGCGKTFPVTQLLKT 465
           I + G+PGCGKT+  + +  T
Sbjct: 643 ILLFGYPGCGKTYLASAISST 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,287,362
Number of Sequences: 5004
Number of extensions: 71286
Number of successful extensions: 201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)