Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5n10
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821...    30   2.2  
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498...    29   3.8  
12_02_0027 + 12427525-12427698,12430082-12430150,12430763-124308...    29   5.0  
07_03_0663 - 20451445-20452442,20452528-20452729                       29   5.0  
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799...    28   6.6  
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29...    28   6.6  

>05_04_0347 +
           20479682-20479753,20480136-20480813,20481143-20482195,
           20482345-20482406,20482491-20482541,20482635-20482719,
           20483253-20483342,20483472-20483563,20483704-20483728
          Length = 735

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 61  LSLIYTGDGSIGHWAADDSPLSAPLSPIRGSAKTLNSFASTAIR 192
           L+L Y+GDGS      +D P +   SP  GS   L+S   T ++
Sbjct: 98  LNLDYSGDGSDSSQTGEDVPTADQASP-SGSGTLLDSMVQTGVQ 140


>07_01_0664 +
           4979892-4979931,4980040-4980236,4982340-4982723,
           4983499-4983549,4983659-4983741,4983818-4983917,
           4984410-4984488,4984957-4985080,4985605-4985711,
           4985810-4985938,4987004-4987089,4987200-4987367,
           4987477-4987637,4987721-4987752,4987866-4988047,
           4988386-4988465,4988885-4988950,4989060-4989349,
           4990433-4990540,4991521-4991618,4991680-4991782,
           4992269-4992345,4992449-4992520,4992579-4992670,
           4992909-4992989,4993290-4993392,4994334-4994492,
           4994696-4995085
          Length = 1213

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = +1

Query: 286 KNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKT 465
           K + +G +Q+   TA   PT         D  P+    ++   G PGC K+    ++L T
Sbjct: 749 KRDEEGDLQAERGTAPPSPT-----STSLDVVPKAEGLIVFFPGIPGCAKSALCKEILTT 803

Query: 466 KAFKGQYR 489
               G  R
Sbjct: 804 PGGLGDNR 811


>12_02_0027 +
           12427525-12427698,12430082-12430150,12430763-12430823,
           12431147-12431264,12431346-12431422,12432881-12432996,
           12433227-12433661
          Length = 349

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 532 GLSIRNATRWWEQRLCTG 479
           G+SI N T WW+  L TG
Sbjct: 83  GISIENQTHWWQMSLRTG 100


>07_03_0663 - 20451445-20452442,20452528-20452729
          Length = 399

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 373 RLFDQGDGKKWGLMMPFG 320
           R+ ++GDG +WG+M+ FG
Sbjct: 362 RMEEEGDGAEWGVMLGFG 379


>06_02_0364 +
           15178583-15178881,15179652-15179723,15179853-15179917,
           15180890-15180934,15182493-15183170,15183376-15183410,
           15183647-15183736,15183896-15183985,15184164-15184262,
           15184938-15185013,15185473-15185588
          Length = 554

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 430 GKTFPVTQLLKT-KAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAPV 606
           GK+ P+   ++  K  K      VP    + +++ +   P   + R+  W T ++    +
Sbjct: 331 GKSPPLAYWVEMRKGRKAWLEKYVPAISHKDKYRVYFNTPDGGLERIPAWATYVLPGLLM 390

Query: 607 LVIDEVYKMPRG 642
           ++I   YKM +G
Sbjct: 391 IIIIGNYKMLKG 402


>05_01_0042 -
           290077-290676,291093-291233,291675-291764,292364-292563,
           292685-292743,292827-292942
          Length = 401

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 406 HITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTT 507
           H+  FP CGK F     LK+   KG  +   P T
Sbjct: 176 HVCPFPACGKRFTSDSKLKSHV-KGHEKTGTPIT 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,829,494
Number of Sequences: 37544
Number of extensions: 528473
Number of successful extensions: 1518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)