Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5n10
         (729 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   1.8  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    24   4.2  
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    24   5.5  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   7.3  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 704  GSPRRM-TNWRAGSATRARSRKPRGILYTSSITKTGADFMREVSQVETRQTSLEGS 540
            GS RR  +  R+GS +R+RSR   G    S          R  S+  +R  S +GS
Sbjct: 1060 GSQRRSRSRSRSGSGSRSRSRSGSGSRAGSRAGSGSRSRSRSRSRSRSRSGSAKGS 1115


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 22  EHLNTIGPDDAPLLSLIYTGDGSIGHWAADDSP 120
           +H+NT   +D+P  + I T   S G++    +P
Sbjct: 524 QHMNTSSMNDSPSPTTILTSVNSSGNYMCRSNP 556


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 713 VWHGSPRRMTNWRAGSATRARSRKPR 636
           +++GS RR++++ +  + +  SRKPR
Sbjct: 171 IFYGSRRRLSSFTSIRSVKNDSRKPR 196


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 489 SRCSHHRVAFRMERPHETP 545
           SR  H  +AF +++P E P
Sbjct: 258 SRSDHELIAFEVKQPDENP 276


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 835,730
Number of Sequences: 2352
Number of extensions: 19004
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)