Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5n10
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.        31   1.1  
U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.        31   1.1  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z75956-6|CAB61026.2|  472|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z75954-8|CAB61020.2|  472|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z49131-2|CAA88975.1|  321|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AJ000259-1|CAA03975.1|  472|Caenorhabditis elegans osm-6 protein.      28   5.9  
AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyc...    28   5.9  
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical
           protein F45D3.5 protein.
          Length = 685

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 166 NSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPT 345
           N  A  A+ FR SHG  +P       +  +  AK +  N+K  T   IQ    T  +DPT
Sbjct: 203 NPLAQMAMGFRYSHGVGVPQNCETALSYYQKVAKTVVDNVKFTTGQTIQRLRLTDETDPT 262


>U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.
          Length = 685

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 166 NSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPT 345
           N  A  A+ FR SHG  +P       +  +  AK +  N+K  T   IQ    T  +DPT
Sbjct: 203 NPLAQMAMGFRYSHGVGVPQNCETALSYYQKVAKTVVDNVKFTTGQTIQRLRLTDETDPT 262


>U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.
          Length = 685

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 166 NSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPT 345
           N  A  A+ FR SHG  +P       +  +  AK +  N+K  T   IQ    T  +DPT
Sbjct: 203 NPLAQMAMGFRYSHGVGVPQNCETALSYYQKVAKTVVDNVKFTTGQTIQRLRLTDETDPT 262


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
           protein F52B5.3 protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 391 SVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELR 516
           S  ++ I+G  GCGKT  V Q +  +A +    V V  T+ R
Sbjct: 196 SCNVVIISGGTGCGKTTQVPQFILDEAHENNKHVRVMVTQPR 237


>AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical
           protein C41D11.7 protein.
          Length = 625

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 397 QLIHITGFPGCGKTFPVTQLL-KTKAFKGQYRVAVPTTE 510
           +L+ I G PG GKTF +T LL +    K Q  V  PT E
Sbjct: 83  KLVCIQGPPGTGKTFTLTLLLCRLIQQKKQVVVLAPTRE 121


>Z75956-6|CAB61026.2|  472|Caenorhabditis elegans Hypothetical
           protein R31.3 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +2

Query: 167 IHLLQQL----FGLETLTAISYHFDKFMSTRSVSLEQKIWPQT*KMRLMELYN-PPSERH 331
           IH+ QQ+    +  E   AIS  F K M T   S   K WP T  +RL E  N  P    
Sbjct: 272 IHMSQQIKVCMYEGELDQAISSDFMKIMDTSLHSFNLKHWPMT--IRLYEALNLSPPPLT 329

Query: 332 HQTPLFSIALIKEPTSPHKFP 394
              P F + +   P  P  FP
Sbjct: 330 LVEPQFELPM--PPFQPAVFP 348


>Z75954-8|CAB61020.2|  472|Caenorhabditis elegans Hypothetical
           protein R31.3 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +2

Query: 167 IHLLQQL----FGLETLTAISYHFDKFMSTRSVSLEQKIWPQT*KMRLMELYN-PPSERH 331
           IH+ QQ+    +  E   AIS  F K M T   S   K WP T  +RL E  N  P    
Sbjct: 272 IHMSQQIKVCMYEGELDQAISSDFMKIMDTSLHSFNLKHWPMT--IRLYEALNLSPPPLT 329

Query: 332 HQTPLFSIALIKEPTSPHKFP 394
              P F + +   P  P  FP
Sbjct: 330 LVEPQFELPM--PPFQPAVFP 348


>Z49131-2|CAA88975.1|  321|Caenorhabditis elegans Hypothetical
           protein ZC373.3 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 184 AIRFRDSHGNLLP-FRQVHEYTLCKPRAKNL 273
           A+RF+D +GN LP F    +YT C  ++ N+
Sbjct: 186 AVRFKDVNGNELPEFNDGFDYTHCTHKSINV 216


>AJ000259-1|CAA03975.1|  472|Caenorhabditis elegans osm-6 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +2

Query: 167 IHLLQQL----FGLETLTAISYHFDKFMSTRSVSLEQKIWPQT*KMRLMELYN-PPSERH 331
           IH+ QQ+    +  E   AIS  F K M T   S   K WP T  +RL E  N  P    
Sbjct: 272 IHMSQQIKVCMYEGELDQAISSDFMKIMDTSLHSFNLKHWPMT--IRLYEALNLSPPPLT 329

Query: 332 HQTPLFSIALIKEPTSPHKFP 394
              P F + +   P  P  FP
Sbjct: 330 LVEPQFELPM--PPFQPAVFP 348


>AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl
           cyclase protein 19 protein.
          Length = 1143

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 61  LSLIYTGDGSIGHWAADDSPLSAPLSPIRGS 153
           +SL YT + S+ +W     PLS P+    G+
Sbjct: 418 VSLAYTNEASLWYWYGGKRPLSVPVCGFAGT 448


>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
           protein F33H1.4 protein.
          Length = 1385

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 710 WHGSPRRMT-NWR-AGSATRARSRKPRGILYTSSITKTGAD 594
           WH +  R + +WR  GSAT + SR+P  +   S ++   AD
Sbjct: 871 WHPAEHRCSQDWRDPGSATTSTSRRPLSLSDFSVVSTESAD 911


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,385,918
Number of Sequences: 27780
Number of extensions: 411936
Number of successful extensions: 1115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)