Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5n07
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027...    28   7.5  
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708...    27   9.9  
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495...    27   9.9  
02_05_1026 - 33598275-33599561                                         27   9.9  

>05_07_0143 +
           28000038-28000211,28002217-28002230,28002713-28002788,
           28003304-28003865,28004476-28004761,28004848-28005118,
           28005478-28005633,28005871-28006368,28006809-28007093
          Length = 773

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 133 LVQDIINAINRTGGSYYVQGRNAGENVESCLLLQRTCRQDRNL-AQSDVN 279
           LVQ +   +NR     Y   R+ G + +  +L +R C    NL A  D+N
Sbjct: 29  LVQSLKEIVNRPEAEIYAALRDCGMDPDEAILFKRQCGFKVNLRAWYDIN 78


>09_02_0302 -
           7086017-7086124,7086125-7086796,7087511-7088070,
           7088754-7089131,7089357-7089821,7090022-7090127,
           7090219-7090294,7090407-7090648,7090824-7090904,
           7091013-7091205,7091336-7091558,7091611-7091646,
           7091694-7091790
          Length = 1078

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -1

Query: 201 GVSTLHIITSAGSIDGVDYILY*CGGGKQKITAAGQEYAHSCYFQGSHVIM 49
           G   +HI  + G++  +D ++  C G +    A+GQ   H      SH ++
Sbjct: 693 GSLPIHIAAANGTLGIIDQLIKLCPGCESSCNASGQTILHIAVQTESHDVV 743


>03_02_0014 +
           4955759-4956106,4956229-4956277,4956372-4956579,
           4956700-4956874,4956981-4957046,4957150-4957263,
           4957366-4957482,4957589-4957715,4957826-4958112,
           4958209-4958399,4958937-4959022,4959117-4959193,
           4959330-4959473
          Length = 662

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 335 AKDLTMKQKKQFVAAAIRPLTQIRLNT 415
           AK +  K KK F  AAI PLT + ++T
Sbjct: 279 AKYIAKKNKKLFWVAAIAPLTSVIIST 305


>02_05_1026 - 33598275-33599561
          Length = 428

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +1

Query: 538 SSNSSDGIRNKIMPIIMMIGAVL----FLGLILYFIYRYMTK 651
           S++  DG+ NKI P I+ I AVL    F+  +L+ + R++ +
Sbjct: 20  SASGIDGVENKISPSIVFIVAVLAIVFFVCGLLHLLVRHLLR 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,049
Number of Sequences: 37544
Number of extensions: 353960
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)