Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5n05
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    89   5e-19
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   8.5  

>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 43/102 (42%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
 Frame = +3

Query: 420 SFRTMFIQTQDTPNPNCLKFLPGTKVLEPG-QTLDFPNIGAAHCSPLAKMLFRIDGVKAV 596
           + R+++I++++TPN N LKFLPG  +L P   + +F        SPLA+ LF IDGV ++
Sbjct: 39  AIRSIWIRSEETPNENALKFLPGLDILPPTIGSCEFMRGQGTVNSPLAQKLFDIDGVDSI 98

Query: 597 FFGPEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTD 722
           FFG +FITV+K     +W  +KPE+F  IM+  ++G PV+++
Sbjct: 99  FFGKDFITVSK-GAGTEWAQMKPEVFSVIMEHLSNGSPVLSE 139


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 335 FTKADKKVPWTIRYFKV*--HSTKESCYFCIL 424
           F +A+ +  + +R F +   H+TK SC+F IL
Sbjct: 125 FDEAETRANYPVRGFDIFMKHATKHSCHFNIL 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,551
Number of Sequences: 5004
Number of extensions: 53324
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)