Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5n05
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920          114   6e-26
06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241...    28   6.7  
07_01_1200 - 11413145-11413780,11415357-11415947                       28   8.8  
04_03_0974 + 21367304-21369634                                         28   8.8  

>05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920
          Length = 139

 Score =  114 bits (275), Expect = 6e-26
 Identities = 56/100 (56%), Positives = 67/100 (67%)
 Frame = +3

Query: 426 RTMFIQTQDTPNPNCLKFLPGTKVLEPGQTLDFPNIGAAHCSPLAKMLFRIDGVKAVFFG 605
           R MFIQTQ TPNP  L F PG  V+E G + DFPN   A  SPLAK LF IDGV  VFFG
Sbjct: 23  RGMFIQTQSTPNPQSLMFYPGKPVMEVGSS-DFPNARTAMTSPLAKALFAIDGVTRVFFG 81

Query: 606 PEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTDA 725
            +F+TVTK  ++  W  LKPE+F  IMDF++SG  +  D+
Sbjct: 82  SDFVTVTK-SEETSWDYLKPEVFAVIMDFYSSGQSLFLDS 120


>06_01_0335 +
           2412766-2415655,2416108-2416208,2416871-2416895,
           2416977-2417049,2417191-2417373,2418164-2418227,
           2418427-2418447,2418862-2418905,2420575-2420650,
           2421359-2421373
          Length = 1163

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +3

Query: 450 DTPNPNCLKFLPGTKVLEPGQTLDFPNIGAAHCSPLAKMLFRIDGVKAVFFGPEFITVTK 629
           D P    LK + G++ +E  QT+     G    + LAK ++    + ++F    +ITV++
Sbjct: 132 DGPKKEILKMISGSEDVEV-QTIWIVGAGGLGKTTLAKKVYESSNITSMFPCRAWITVSQ 190

Query: 630 QDDDVDWKLLKPEI 671
             D +D  LLK  I
Sbjct: 191 SFDVMD--LLKDMI 202


>07_01_1200 - 11413145-11413780,11415357-11415947
          Length = 408

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 298 VVNSATVYYSHQLYKGRQESTMDYQVF*SLTFHKRVLLFLHPSVPCSYKLKTH 456
           VV +    +  +L KG +E  +D +    ++F ++V LF+ P     Y+L  H
Sbjct: 354 VVANLLYCFDWKLPKGMKEEDIDMEEIGQISFRRKVELFIVPVKHEQYQLMGH 406


>04_03_0974 + 21367304-21369634
          Length = 776

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +3

Query: 363 GLSGILKSDIPQKSPAIFASFRTMFIQTQDTPNPNCLKFLPGTKVLEPGQTLDFPNIGAA 542
           G++ +L+S  P  SPA   S        +D  +   L  +PG     PG  LD+   G+ 
Sbjct: 556 GVAALLRSAHPDWSPAAVRSAMMTTAYVKDNADDADLVSMPGG---SPGTPLDY---GSG 609

Query: 543 HCSP 554
           H SP
Sbjct: 610 HVSP 613


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,368,816
Number of Sequences: 37544
Number of extensions: 303880
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)