Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5n05
         (735 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    24   4.2  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   7.4  
DQ182015-1|ABA56307.1|  353|Anopheles gambiae G(alpha)q2 protein.      23   9.8  

>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 288  FLKSSKQCNRVLFASTLQRQTRKYHGLSGILKSDIPQ 398
            +++S+ +C++ L  S L       H + GI+  D+ Q
Sbjct: 1972 YVRSTHECSQQLVGSALSVLWMVVHSVHGIMFKDLKQ 2008


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 57  LVKSQIKFYDEIINCQQ 7
           LVK +IK YDE+++ ++
Sbjct: 356 LVKEEIKQYDELVSAKE 372


>DQ182015-1|ABA56307.1|  353|Anopheles gambiae G(alpha)q2 protein.
          Length = 353

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 348 SAFVKLMRIVHG 313
           S F+K MRI+HG
Sbjct: 47  STFIKQMRIIHG 58


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,641
Number of Sequences: 2352
Number of extensions: 14342
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75260343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)