Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5n05
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical pr...   120   1e-27
Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z92804-4|CAB07251.1|  335|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical
           protein R10H10.1 protein.
          Length = 222

 Score =  120 bits (288), Expect = 1e-27
 Identities = 56/101 (55%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
 Frame = +3

Query: 426 RTMFIQTQDTPNPNCLKFLPGTKVL-EPGQTLDFPNIGAAHCSPLAKMLFRIDGVKAVFF 602
           R+M+IQ Q+TPNP  LKFLPG ++L +  +T DF +   A  SPLA  L R+DGVK VFF
Sbjct: 14  RSMYIQVQETPNPLSLKFLPGQQLLPDASKTYDFSSAATAKQSPLAIKLLRVDGVKRVFF 73

Query: 603 GPEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTDA 725
           G +F+TVTK D+ VDW LL+PEIF TI D   +G PV+ +A
Sbjct: 74  GEDFVTVTKSDETVDWALLRPEIFSTIADHIQTGKPVINEA 114


>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 405 DSFVECQTLKYLIVHGTFLSAFVKLMRIVHGCTVYY 298
           D  + C T KY + H  ++S F+  ++++     YY
Sbjct: 133 DRLISCYTPKYYLSHQYYVSIFLLFIQLIFTLGTYY 168


>Z92804-4|CAB07251.1|  335|Caenorhabditis elegans Hypothetical
           protein K05D4.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 391 MSDFKIPDSPWYFLVCLCKVDANSTRLH 308
           M DF   + P+YF +CL  V A S  LH
Sbjct: 1   MVDFSFLNEPYYFSMCLYVVGALSFPLH 28


>Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 351 LSAFVKLMRIVHGCTVYYFLKSVVAFVA*FQLFKLFEVIKLLSATIQY*CYCFKVNW 181
           LS  VK +R+       YF   V+   A + L     V ++  + + Y C   K NW
Sbjct: 374 LSKHVKTLRLSSSVVENYFESEVITKKADYGLMHWLNVQEIAYSLVLYQCDFHKTNW 430


>Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 351 LSAFVKLMRIVHGCTVYYFLKSVVAFVA*FQLFKLFEVIKLLSATIQY*CYCFKVNW 181
           LS  VK +R+       YF   V+   A + L     V ++  + + Y C   K NW
Sbjct: 374 LSKHVKTLRLSSSVVENYFESEVITKKADYGLMHWLNVQEIAYSLVLYQCDFHKTNW 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,109,097
Number of Sequences: 27780
Number of extensions: 298264
Number of successful extensions: 654
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)