Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5m24
(453 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81538-2|CAB04384.1| 90|Caenorhabditis elegans Hypothetical pr... 64 6e-11
U39652-3|AAA80402.1| 90|Caenorhabditis elegans Hypothetical pr... 62 2e-10
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 2.1
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 29 2.1
Z50873-3|CAA90761.4| 531|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical pr... 27 8.4
X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic int... 27 8.4
U41532-2|AAV28353.1| 292|Caenorhabditis elegans Hypothetical pr... 27 8.4
AF016435-3|AAB65879.1| 438|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z81538-2|CAB04384.1| 90|Caenorhabditis elegans Hypothetical
protein F45H10.2 protein.
Length = 90
Score = 63.7 bits (148), Expect = 6e-11
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +3
Query: 99 TMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVVPPFIIGYL 275
+MGKHFG L K+ G + ++ +EQ+AY G F+ + + + +P I YL
Sbjct: 7 SMGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVKTFKTYVWDQWYYYIPQTIGAYL 66
Query: 276 IYEGVEREHHRLSRKNPADFENDQ 347
+Y+ ++ + +RKNPADF NDQ
Sbjct: 67 LYDWAKKTNVAANRKNPADFANDQ 90
>U39652-3|AAA80402.1| 90|Caenorhabditis elegans Hypothetical
protein R07E4.3 protein.
Length = 90
Score = 62.1 bits (144), Expect = 2e-10
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +3
Query: 102 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVVPPFIIGYLI 278
MGKHFG L K+ G + ++ +EQ+AY G F+ + + + +P I YL+
Sbjct: 8 MGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVRTFKTYVWDQWYYYIPQTIGAYLL 67
Query: 279 YEGVEREHHRLSRKNPADFENDQ 347
Y+ ++ + +RKNPADF ND+
Sbjct: 68 YDWAKKTNVAANRKNPADFANDE 90
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 280 YIKYPMMKGGTTLKTLSRNLLKIL-GIPFEI 191
YI Y +KG +K L++NL K+L G+P I
Sbjct: 773 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 803
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 280 YIKYPMMKGGTTLKTLSRNLLKIL-GIPFEI 191
YI Y +KG +K L++NL K+L G+P I
Sbjct: 893 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 923
>Z50873-3|CAA90761.4| 531|Caenorhabditis elegans Hypothetical
protein F17E5.2 protein.
Length = 531
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 195 SNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVERE 299
+ G ++R + KV+P I Y++YE V ++
Sbjct: 491 TEGFTGLYRGITPNFMKVIPAVSISYVVYEKVRKQ 525
>Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 269 SNDEGRDYFKNALTKSSEDIR 207
+ E R+YFKN L S DIR
Sbjct: 266 TTSENREYFKNELMNSIRDIR 286
>Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 269 SNDEGRDYFKNALTKSSEDIR 207
+ E R+YFKN L S DIR
Sbjct: 266 TTSENREYFKNELMNSIRDIR 286
>X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 269 SNDEGRDYFKNALTKSSEDIR 207
+ E R+YFKN L S DIR
Sbjct: 266 TTSENREYFKNELMNSIRDIR 286
>U41532-2|AAV28353.1| 292|Caenorhabditis elegans Hypothetical
protein F11D5.7 protein.
Length = 292
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = -1
Query: 393 KLISTLNNFNLQTMFIDHF---QNQQGSSVIV 307
K++STLNN+N++ F++ NQ G+++ +
Sbjct: 64 KILSTLNNYNVRLSFVNSIITTSNQVGNALSI 95
>AF016435-3|AAB65879.1| 438|Caenorhabditis elegans Hypothetical
protein F59D6.4 protein.
Length = 438
Score = 26.6 bits (56), Expect = 8.4
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = -2
Query: 284 FIYQVSNDEGRDYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDKTPNFS*FSKVFA 105
++ + S E +N K E I + N + CS+ G + +KTP+ S S +
Sbjct: 84 YLSEYSKIEVSGNLENCGCKGGE-IEISTKNQFANCSVLYGGLQIFNKTPDLSALSNIEI 142
Query: 104 HSG--ELLTSNFCN-KILRNIQ 48
G E+ SNF N L+N++
Sbjct: 143 IKGEIEIQNSNFQNLTFLKNLK 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,984,266
Number of Sequences: 27780
Number of extensions: 175418
Number of successful extensions: 392
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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