Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5m21
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   1.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.0  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   2.0  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   2.0  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    22   6.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 339 GSRKQIYYGTRRRMGGRWRCDDD 271
           G  +  +    + MGG+W CD D
Sbjct: 691 GKPRSAFLTDLKLMGGKWSCDCD 713


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 668 RRLHVVSTVRL*NTRK*CWLQNVASQRDKR 757
           RR+ + S ++L  T+   W QN   ++ KR
Sbjct: 282 RRIEIASALQLNETQVKIWFQNRRMKQKKR 311


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 668 RRLHVVSTVRL*NTRK*CWLQNVASQRDKR 757
           RR+ + S ++L  T+   W QN   ++ KR
Sbjct: 71  RRIEIASALQLNETQVKIWFQNRRMKQKKR 100


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 668 RRLHVVSTVRL*NTRK*CWLQNVASQRDKR 757
           RR+ + S ++L  T+   W QN   ++ KR
Sbjct: 71  RRIEIASALQLNETQVKIWFQNRRMKQKKR 100


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 98  CIGSSIFNRNLFISKYNAIALIV 30
           C G   F +NL +   N + L V
Sbjct: 38  CYGRHFFKKNLIVGSENCLVLNV 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,189
Number of Sequences: 336
Number of extensions: 3357
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)