Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5m21
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    34   0.019
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    28   1.3  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    27   2.9  
SPBC216.06c |swi1||replication fork protection complex subunit S...    27   2.9  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   5.1  
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    26   6.7  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   6.7  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    26   6.7  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   8.9  
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ...    25   8.9  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   8.9  

>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
 Frame = +1

Query: 424  YSLNSTSSTEYKISDVVMTMIFLLRSEKYHSLFKL--LETTFDDYTCRPQMTQVQTDTLL 597
            YSL     +   ++  +   +  L  E Y  L  L  LE   D   C P +   Q DT+L
Sbjct: 1089 YSLLDIPESLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVD---CSPSIIDEQVDTIL 1145

Query: 598  DAVRSLLEMPSTTVDLTT-----VDIMRSSFARCF 687
            +A+R ++E+  T   L T     +D++RS+    F
Sbjct: 1146 EALRKIIELRKTEKTLKTDSDNILDLVRSALRVLF 1180


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 562 PQMTQVQTDTLLDAVRSLLEMPSTTVDLTTVDIMRSSFARCFNSPIMKYAKIV 720
           PQ+T++    + D VR        T+D ++++I +S+F        +K A ++
Sbjct: 182 PQVTELLATVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLI 234


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/63 (20%), Positives = 26/63 (41%)
 Frame = +1

Query: 457 KISDVVMTMIFLLRSEKYHSLFKLLETTFDDYTCRPQMTQVQTDTLLDAVRSLLEMPSTT 636
           K  D+    +      K+     L  +++ DY    Q+  ++ D LLD  R+ +      
Sbjct: 438 KDQDITYICLSTAHPAKFDKAVNLALSSYSDYNFNTQVLPIEFDGLLDEERTCIFSGKPN 497

Query: 637 VDL 645
           +D+
Sbjct: 498 IDI 500


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +3

Query: 567 NDAGSNGHAVGRRAISVGDAFDHSRLDDRRYYAVVVCTLFQQSDYEI 707
           N+ G++G  +G+      D+F+ + L D ++  ++    F++SD  I
Sbjct: 749 NEGGNDGERMGKNLKGDTDSFNTALLKDGKFRLLLELCGFEESDNNI 795


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 394 RNAARKLIHHYSLNSTS 444
           R   RKL+HH SLN+ S
Sbjct: 65  RKPTRKLVHHISLNNVS 81


>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 22  SSVTMSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINF 183
           S+ ++  + L ++      + D  +Q AI+   +PL CD+ +   L+T + I F
Sbjct: 119 STTSLDQLKLAIKEKVQVWRSDASLQKAIYIYTYPLACDKGKKT-LSTSIAIEF 171


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 491 CCDRKSIIRCSNCSKPRL--TTTRADRK*RRFKRTRCWTPCDLC 616
           C D K  ++C  C KP L  +   +D +      ++CWT C  C
Sbjct: 369 CYDNKYAVKCKKCRKPILGISVKGSDGE----YHSQCWT-CGAC 407


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -1

Query: 756  RLSRCEATFCNQHYFRVFHNRTVETTCKRRPHNIDGRQ---VDCGRR 625
            +++RC   +C +HY +    R  E   K+    +D  +   V CGR+
Sbjct: 999  KMNRCSDNWCYEHYIQARGMRRAEDVRKQLIRLMDRYRHPVVSCGRK 1045


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 130 LCDEHQNVQLNTDVLINFI 186
           +CD H+N   N D+L  F+
Sbjct: 387 ICDLHENTSFNIDILPGFL 405


>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 699 YEIRENSAGYKTWLHSAT 752
           YEI EN +GY + LH+ T
Sbjct: 154 YEIAENPSGYASALHTLT 171


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +3

Query: 405 SQTNPSLFVEQHQFYRIQNQRRGHDHDIFAAIGKVSFVVQTARNHV*RLHVQ--TANDAG 578
           SQ+ PSL VEQ++ + I N+    + +  +      +  QTA  H+    +Q  T  D  
Sbjct: 165 SQSPPSLDVEQNKPFSISNEPVEQETENSSTKDLQVYDFQTASEHLPEQSLQNTTYYDPS 224

Query: 579 SNGHAVGRRAISVGDAFDHSRLD 647
               +V    I  G +  H +LD
Sbjct: 225 KTYSSVNFEEIEYGKS--HEKLD 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,776
Number of Sequences: 5004
Number of extensions: 53157
Number of successful extensions: 184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)