Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5m21
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 30 1.7
07_03_1289 + 25531531-25531995 30 2.3
02_05_0433 - 28939817-28940146 30 2.3
10_06_0004 - 9407954-9408007,9408219-9408386,9408441-9408542,940... 29 3.1
03_02_0953 + 12684695-12684818,12684910-12685517 29 5.3
03_01_0584 - 4325907-4326190,4326638-4327060,4327218-4327449 29 5.3
06_02_0352 + 15083174-15083433,15083973-15084108 28 9.3
04_01_0206 + 2507827-2508705,2508844-2509902 28 9.3
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694... 28 9.3
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 30.3 bits (65), Expect = 1.7
Identities = 27/102 (26%), Positives = 46/102 (45%)
Frame = +1
Query: 454 YKISDVVMTMIFLLRSEKYHSLFKLLETTFDDYTCRPQMTQVQTDTLLDAVRSLLEMPST 633
Y +D+V + L+ + + H L T + T Q+ ++ T+LD +R LL+
Sbjct: 248 YMNNDLVGLLASLIPTPRCHFLM----TGYTPLTVERQVNMIRKTTVLDVMRRLLQ---- 299
Query: 634 TVDLTTVDIMRSSFARCFNSPIMKYAKIVLVTKRGFTARQTH 759
T +IM SS+AR + KY I+ + + Q H
Sbjct: 300 -----TKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVH 336
>07_03_1289 + 25531531-25531995
Length = 154
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 631 SKASPTEIARRPTACPFEPASFAVCTCSRQT 539
SK PT A RPTA PA V C QT
Sbjct: 99 SKLQPTPAAARPTATGAPPAMVVVSACQFQT 129
>02_05_0433 - 28939817-28940146
Length = 109
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/53 (28%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = -1
Query: 663 HNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGF-EQFEQRMI 508
H +D R+ + RH Q+R+ ++Q+ R +++ L R+++++ + E+ EQR +
Sbjct: 32 HRLDVRRQEALERHAQERA-AIEQQWRQSMQALERERLMLEQAWMEREEQRRV 83
>10_06_0004 -
9407954-9408007,9408219-9408386,9408441-9408542,
9408710-9408934,9409889-9410047,9411768-9411900,
9412827-9413758,9413842-9413987,9415863-9416082
Length = 712
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 501 GKVSFVVQ--TARNHV*RLHVQTANDAGSNGHAVGRRAISVGDAFDH 635
G VSF V T NH ++ V AN+ G+ G R G+A DH
Sbjct: 188 GNVSFTVSLTTPLNH--QIRVTNANEIIMEGYCPGERPTEYGNASDH 232
>03_02_0953 + 12684695-12684818,12684910-12685517
Length = 243
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -1
Query: 354 RRDGVGSRKQIYYGTRRRMGGRWRCD--DDARVSR 256
RR G R+ +Y G RRR G+W + D A+ +R
Sbjct: 56 RRQRRGERRTLYRGIRRRPWGKWAAEIRDPAKGAR 90
>03_01_0584 - 4325907-4326190,4326638-4327060,4327218-4327449
Length = 312
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -1
Query: 411 FASSISVSAHVDQLFGRLRRRDGVGSRKQIYYGTRRRMGGRWRCD-DDARVSRRV-LRRY 238
F+S +S S+ + S+K Y G RRR GR+ + D + RRV L Y
Sbjct: 78 FSSDVSSSSRPRRRVAAAAAGRRKASKKSKYRGVRRRPSGRFAAEIRDPKKGRRVWLGTY 137
Query: 237 GS 232
GS
Sbjct: 138 GS 139
>06_02_0352 + 15083174-15083433,15083973-15084108
Length = 131
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 521 SNCSKPRLTTTRADRK*RRFKRTRCWTPCDLCWRCLR 631
+ C + + DR+ F +R T C CW+C+R
Sbjct: 51 ATCGGEAVVPSPGDRRTVVFATSRATTFCRPCWKCMR 87
>04_01_0206 + 2507827-2508705,2508844-2509902
Length = 645
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 624 HLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQF 523
+LQ R H +++ L+L++ S + KRG F
Sbjct: 190 YLQDRDHRIREEEELSLQYAHSLHHICKRGIVNF 223
>01_06_1604 +
38567374-38567391,38567505-38567636,38569377-38569445,
38569545-38569775,38570883-38571013,38571471-38571629,
38573078-38573366
Length = 342
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 67 KLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNT 216
K RLK++ P I ++ D + +N + L++ + HV +NT
Sbjct: 145 KTRLKLESPRSWRISIDEVAVVADSDGDADVNAEQLLHLLEHVGAIGENT 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,434,299
Number of Sequences: 37544
Number of extensions: 356506
Number of successful extensions: 1146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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