Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5m21
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-6|AAB53828.1| 873|Caenorhabditis elegans Hypothetical pr... 30 2.1
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 29 4.8
U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine rece... 28 6.3
U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine rece... 28 6.3
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a... 28 6.3
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 8.3
AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical ... 28 8.3
AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical ... 28 8.3
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 8.3
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 8.3
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 8.3
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 8.3
>U00048-6|AAB53828.1| 873|Caenorhabditis elegans Hypothetical
protein C05D11.8 protein.
Length = 873
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 639 DCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQRMILFRSQ 493
D +HL GVQ R+ + + S + ++RGFE + R + Q
Sbjct: 751 DSSEKHLLTILQGVQTRIDVMAEGIESFEIWIERGFETLKARACRIKQQ 799
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 28.7 bits (61), Expect = 4.8
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = -1
Query: 729 CNQHYFRVFHNRT---VETTCKRRPHNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRS 559
C++ Y + FH T V+ R + DGR VD G +HL R V RL LR+
Sbjct: 559 CSKRYPKDFHPSTTLNVDGYPGYRRRD-DGRYVDYGTQHLDNR-RVVPYNKRLLLRYNAH 616
Query: 558 ARVVVKRGFEQFEQRMILFRSQQKYHGHDHVA 463
V + GF E LF+ Y GHD A
Sbjct: 617 MNVEI-CGF--IEAVKYLFK--YVYKGHDRAA 643
>U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 9 protein.
Length = 351
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 427 SLNSTSSTEYKISDVVMTMIFLLRSEKYHSLF 522
S+NST ST++++ +V + +F++ YH F
Sbjct: 227 SINSTLSTKFQLEEVYFSTMFVITVVFYHVAF 258
>U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 8 protein.
Length = 351
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 427 SLNSTSSTEYKISDVVMTMIFLLRSEKYHSLF 522
S+NST ST++++ +V + +F++ YH F
Sbjct: 227 SINSTLSTKFQLEEVYFSTMFVITVVFYHVAF 258
>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform a protein.
Length = 1136
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 496 RSEKYHSLFKLLETTFDDYTCRPQMTQ--VQTDTLLDAV 606
RS Y L + L F DY CR Q++ D L+D +
Sbjct: 442 RSSMYRQLEEQLNKAFPDYVCRSQLSSDYESADILVDPI 480
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 714 FRVFHNRT-VETTCKRRPHNIDGRQVD 637
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical
protein B0205.1b protein.
Length = 720
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 568 MTQVQTDTLLDAVRSLLEMPSTTVD-LTTVDIMRSSFARCFNSPIMKY 708
+T +++DTL+D +R + E+ + T D + D++ + CF K+
Sbjct: 604 LTSLESDTLIDLMREIKELRNRTNDEILPPDLVIPALQTCFMGITRKF 651
>AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical
protein B0205.1a protein.
Length = 745
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 568 MTQVQTDTLLDAVRSLLEMPSTTVD-LTTVDIMRSSFARCFNSPIMKY 708
+T +++DTL+D +R + E+ + T D + D++ + CF K+
Sbjct: 629 LTSLESDTLIDLMREIKELRNRTNDEILPPDLVIPALQTCFMGITRKF 676
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 714 FRVFHNRT-VETTCKRRPHNIDGRQVD 637
F F +T V+ K+RPH IDG+ VD
Sbjct: 30 FVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 714 FRVFHNRT-VETTCKRRPHNIDGRQVD 637
F F +T V+ K+RPH IDG+ VD
Sbjct: 30 FVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 714 FRVFHNRT-VETTCKRRPHNIDGRQVD 637
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 714 FRVFHNRT-VETTCKRRPHNIDGRQVD 637
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,065,300
Number of Sequences: 27780
Number of extensions: 320442
Number of successful extensions: 1077
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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