Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5m20
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    81   1e-16
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    81   2e-16
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    27   2.6  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   6.0  

>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 35/50 (70%), Positives = 42/50 (84%)
 Frame = +2

Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
           RKSE+EYYA+L+K  VHHY+G  I+LGTACGK +RV  LAITD GDSDI+
Sbjct: 58  RKSELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 34/54 (62%), Positives = 41/54 (75%)
 Frame = +3

Query: 57  VAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
           V  KK KK+ ++IN++LAL MKSGK  LGYK TLKTLR G+A L +IA N PPL
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPL 57


>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 34/50 (68%), Positives = 42/50 (84%)
 Frame = +2

Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
           RKSE+EYYA+L++  VHHYSGN I+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 66  RKSELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +3

Query: 45  APKMVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
           AP    +KK KK+ ++INS+LAL MKSGK  LGYK TLKTLR G+A L +IA NAPPL
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPL 65


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 191 YHRXXCSSAXVRLLRSRVSQYLSKGCIWSLTDKEVWIPFVVX*NSSQK*G 340
           Y    CSS   ++L S +S+ L +  +W    K      V+   SSQ  G
Sbjct: 507 YRMSHCSSNSNKVLASEISESLRRDLLWERRQKAAMNSAVLRRQSSQSSG 556


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 444 INSIXLHSFLNTXLLDHNVGNLWSSL 521
           I+SI +H F +  LL H  G  WS+L
Sbjct: 247 ISSIFVHPFKDPSLLVHFTGLKWSTL 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,325
Number of Sequences: 5004
Number of extensions: 37801
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)