Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5m20
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...    91   8e-19
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...    90   1e-18
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...    88   7e-18
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929...    29   4.7  

>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +2

Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
           RKSEIEYYA+L K  VHH+ GN ++LGTACGKYYRVC L+I DPGDSDII
Sbjct: 97  RKSEIEYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDII 146



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 31/54 (57%), Positives = 38/54 (70%)
 Frame = +3

Query: 57  VAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
           V A  QKK+ ++IN++L LVMKSGK  LGYK  LKTLR  +  L I+A N PPL
Sbjct: 43  VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPL 96


>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 38/50 (76%), Positives = 44/50 (88%)
 Frame = +2

Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
           RKSEIEYYA+LAK  VHH+ GN ++LGTACGKY+RVC L+I DPGDSDII
Sbjct: 56  RKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDII 105



 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 34/55 (61%), Positives = 42/55 (76%)
 Frame = +3

Query: 54  MVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
           MVAAKK KK+ ++IN++L LVMKSGK  LGYK  L+TLR  +A L II+ N PPL
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPL 55


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 35/49 (71%), Positives = 43/49 (87%)
 Frame = +2

Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDI 691
           RKSEIEYYA+L K  V+H++GN ++LGTACGKYYRVC L++ DPGDSDI
Sbjct: 174 RKSEIEYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDI 222



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 29/48 (60%), Positives = 33/48 (68%)
 Frame = +3

Query: 75  KKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
           KK  E IN++L LVMKSGK  LGYK  LKTLR  +  L I+A N PPL
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPL 173


>06_01_1127 +
           9294079-9294193,9294300-9294369,9294611-9294716,
           9295665-9295805,9296377-9296475
          Length = 176

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +3

Query: 105 LALVMKSGKX-CL--GYKQTLKTLRQGRAXLXIIAXNAPPL 218
           L LV ++ +  CL  G K+ +K++R+G+  L IIA N  P+
Sbjct: 33  LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,426,684
Number of Sequences: 37544
Number of extensions: 235474
Number of successful extensions: 366
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)