Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5m20
(698 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30 pro... 105 1e-22
L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30 pro... 105 1e-22
BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30 p... 105 1e-22
BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30 p... 105 1e-22
AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30 p... 105 1e-22
BX322644-3|CAI18448.2| 258|Homo sapiens tripartite motif-contai... 30 9.1
BX322644-2|CAM25692.1| 229|Homo sapiens tripartite motif-contai... 30 9.1
BX005441-3|CAM26236.1| 229|Homo sapiens tripartite motif-contai... 30 9.1
BX005441-2|CAM26235.1| 258|Homo sapiens tripartite motif-contai... 30 9.1
BC060785-1|AAH60785.1| 258|Homo sapiens TRIM40 protein protein. 30 9.1
AL671859-9|CAM24935.1| 258|Homo sapiens tripartite motif-contai... 30 9.1
AL671859-8|CAI17585.1| 229|Homo sapiens tripartite motif-contai... 30 9.1
AL669914-9|CAI18185.2| 258|Homo sapiens tripartite motif-contai... 30 9.1
AL669914-8|CAM25505.1| 229|Homo sapiens tripartite motif-contai... 30 9.1
AF489517-1|AAM09503.1| 229|Homo sapiens TRIM40 protein. 30 9.1
AB202084-1|BAE78604.1| 229|Homo sapiens ring finger protein 40 ... 30 9.1
AB110940-1|BAD13706.1| 229|Homo sapiens TRIM40 protein protein. 30 9.1
AB110939-1|BAD13705.1| 229|Homo sapiens TRIM40 protein protein. 30 9.1
>X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 105 bits (253), Expect = 1e-22
Identities = 47/50 (94%), Positives = 48/50 (96%)
Frame = +2
Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
RKSEIEYYA+LAKTGVHHYSGN IELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
Score = 80.2 bits (189), Expect = 7e-15
Identities = 40/55 (72%), Positives = 44/55 (80%)
Frame = +3
Query: 54 MVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
MVAAKK KK+ ESINSRL LVMKSGK LGYKQTLK +RQG+A L I+A N P L
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL 55
>L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 105 bits (253), Expect = 1e-22
Identities = 47/50 (94%), Positives = 48/50 (96%)
Frame = +2
Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
RKSEIEYYA+LAKTGVHHYSGN IELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
Score = 80.2 bits (189), Expect = 7e-15
Identities = 40/55 (72%), Positives = 44/55 (80%)
Frame = +3
Query: 54 MVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
MVAAKK KK+ ESINSRL LVMKSGK LGYKQTLK +RQG+A L I+A N P L
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL 55
>BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 105 bits (253), Expect = 1e-22
Identities = 47/50 (94%), Positives = 48/50 (96%)
Frame = +2
Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
RKSEIEYYA+LAKTGVHHYSGN IELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
Score = 80.2 bits (189), Expect = 7e-15
Identities = 40/55 (72%), Positives = 44/55 (80%)
Frame = +3
Query: 54 MVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
MVAAKK KK+ ESINSRL LVMKSGK LGYKQTLK +RQG+A L I+A N P L
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL 55
>BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 105 bits (253), Expect = 1e-22
Identities = 47/50 (94%), Positives = 48/50 (96%)
Frame = +2
Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
RKSEIEYYA+LAKTGVHHYSGN IELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
Score = 80.2 bits (189), Expect = 7e-15
Identities = 40/55 (72%), Positives = 44/55 (80%)
Frame = +3
Query: 54 MVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
MVAAKK KK+ ESINSRL LVMKSGK LGYKQTLK +RQG+A L I+A N P L
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL 55
>AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 105 bits (253), Expect = 1e-22
Identities = 47/50 (94%), Positives = 48/50 (96%)
Frame = +2
Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
RKSEIEYYA+LAKTGVHHYSGN IELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
Score = 80.2 bits (189), Expect = 7e-15
Identities = 40/55 (72%), Positives = 44/55 (80%)
Frame = +3
Query: 54 MVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
MVAAKK KK+ ESINSRL LVMKSGK LGYKQTLK +RQG+A L I+A N P L
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL 55
>BX322644-3|CAI18448.2| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BX322644-2|CAM25692.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BX005441-3|CAM26236.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BX005441-2|CAM26235.1| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BC060785-1|AAH60785.1| 258|Homo sapiens TRIM40 protein protein.
Length = 258
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL671859-9|CAM24935.1| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL671859-8|CAI17585.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL669914-9|CAI18185.2| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL669914-8|CAM25505.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AF489517-1|AAM09503.1| 229|Homo sapiens TRIM40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AB202084-1|BAE78604.1| 229|Homo sapiens ring finger protein 40
protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AB110940-1|BAD13706.1| 229|Homo sapiens TRIM40 protein protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AB110939-1|BAD13705.1| 229|Homo sapiens TRIM40 protein protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 689 CPSHQGL*WRVCTLCSIFRMLFLIQCXSRCSGEHLS 582
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,616,678
Number of Sequences: 237096
Number of extensions: 1294273
Number of successful extensions: 1573
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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